getExperiment {Xeva} | R Documentation

## Get PDX experiment data

### Description

For a given `model.id`, `getExperiment` will

### Usage

    getExperiment(object, model.id = NULL, batch = NULL,
      patient.id = NULL, drug = NULL, control.name = NULL,
      treatment.only = FALSE, max.time = NULL, vol.normal = FALSE,
      log.volume = FALSE, return.list = FALSE, impute.value = FALSE,
      concurrent.time = FALSE)

    ## S4 method for signature 'XevaSet'
    getExperiment(object, model.id = NULL,
      batch = NULL, patient.id = NULL, drug = NULL,
      control.name = NULL, treatment.only = FALSE, max.time = NULL,
      vol.normal = FALSE, log.volume = FALSE, return.list = FALSE,
      impute.value = FALSE, concurrent.time = FALSE)

### Arguments

`object` | The `XevaSet` object.
`model.id` | The `model.id` for which data is required, multiple IDs are allowed.
`batch` | Batch name from the `XevaSet` or experiment design.
`patient.id` | Patient id from the `XevaSet`. Default `NULL`.
`drug` | Name of the drug.
`control.name` | Name of drug used as control. Default `NULL`.
`treatment.only` | Default `FALSE`. If `TRUE`, give data for non-zero dose periods only (if dose data are available).
`max.time` | Maximum time for data.
`vol.normal` | If TRUE it will normalize the volume. Default `FALSE`.
`log.volume` | If TRUE log of the volume will be used. Default `FALSE`.
`return.list` | Default `FALSE` will return a `data.frame`.
`impute.value` | Default `FALSE`. If `TRUE`, impute the missing values.
`concurrent.time` | Default `FALSE`. If `TRUE`, cut the batch data such that control and treatment will end at same time point.

### Value

a `data.fram` will all the the values stored in experiment slot

### Examples

    data(brca)

    getExperiment(brca, model.id="X.6047.uned", treatment.only=TRUE)

    getExperiment(brca, model.id=c("X.6047.uned", "X.6047.pael"), treatment.only=TRUE)

    getExperiment(brca, batch="X-6047.paclitaxel", treatment.only=TRUE)

    ed <- list(batch.name="myBatch", treatment=c("X.6047.LJ16","X.6047.LJ16.trab"),
                 control=c("X.6047.uned"))

    getExperiment(brca, batch=ed)

[Package Xeva version 1.3.0 Index]