ad95d8aa40ea49fb6285a43ee3456bb3 *DESCRIPTION
8bd6afcf8e152dc9999d9066707cc81a *INDEX
9d0c63175a099288ed8969fe1677fa33 *Meta/Rd.rds
6a3ceea647074fde2749b8a0158fb602 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
f1a5aba7468eeee61c228622cabcf945 *Meta/hsearch.rds
8431bf53f7e4e45c7940e08c9f1b8e23 *Meta/links.rds
cf47c26c217e2d0f277e17c8cd035798 *Meta/nsInfo.rds
6f54aafc474e8b2695366e742aefd46f *Meta/package.rds
38ae9c5f7a1a41e7230953f0abc5583b *Meta/vignette.rds
f2a560657232b2afbdce094b763648da *NAMESPACE
302eb74005d4628313dd72f235ada0c6 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/VariantTools
72cabf28beb3d48467d9047c2f472c92 *R/VariantTools.rdb
2d48fd833c9b86d3a2bc0e13751170ec *R/VariantTools.rdx
147b05616262b8b0605ad82917fe8c23 *data/vignette.rda
8d5ddf1aee747bfe9f75ad0ffc3f13e3 *doc/VariantTools.R
b7f9d4a21e2fe40fe4373ba070ec12c4 *doc/VariantTools.Rnw
1bcaef3eca3f1db7987e25fa03133f13 *doc/VariantTools.pdf
e502007f6e906fa8467344cec2f4e1b6 *doc/fig/VariantCallingProcess.pdf
e6a9a9d24613ddbf590543bc5ebeac0d *doc/fig/bar-caller-freq-summary-dbSNP-count-all.pdf
0ea34819326314eae4c6b9d5f4ee9dbe *doc/fig/bar-fdr-cov-bin-merged-all.pdf
1c91bbadcef2b6cba06c5d9b328ba192 *doc/fig/bar-fnr-cov-bin-merged-all.pdf
380b2a619aefe23bd017320b0f05540f *doc/fig/boxplot-altFraction.pdf
34a468a845bb92d33e20533d70da349b *doc/fig/boxplot-expected-obs-freq-source-merged-vt.pdf
dc08e35af067169253e263d844fbc13f *doc/fig/boxplot-obs-freq-sample-ceu-all.pdf
a6d1a91d902b823ea49e3533087adc3a *doc/fig/density-altFraction.pdf
9081576fb3392c333fa126ad4557c53a *doc/fig/dot-percent-recovered-caller-merged-20-all.pdf
31b854f38096fba1546ecf0124be1101 *doc/fig/errors.pdf
ff7f4e378ea15116c447180c721ed35c *doc/fig/hist-fdr-rep-count-all.pdf
cafe8bda6b95fb9dd48a1f3dcd14fca3 *doc/fig/igv_high_cov_neg.png
72c5d2679455c4913dfc6c684c2839e2 *doc/fig/mix.pdf
5192ba8e79d29bf7c9f7f2008dd7aa98 *doc/fig/post-filters.pdf
c81e6de4687156b4883bdefed5c79edb *doc/fig/variant-calling-filters.pdf
8360dff4ce73e85ebe879d662a8da062 *doc/fig/workflow.pdf
a6d9c0aa068f83ee474249201946c09f *doc/index.html
04f3442396ed48d6be465606e784d7ca *doc/tutorial.org
e18d1dc09c30c968212c5bef7d5dd6da *doc/tutorial.pdf
e372e3b655282fec0a7ca5f149509595 *help/AnIndex
f51ab5036d9be9113cf16f8a81069600 *help/VariantTools.rdb
3007a3587687f82376ce0b37b90b039d *help/VariantTools.rdx
890858b3e657215a8e71680cd6485e3b *help/aliases.rds
22300060d0de1ea52038f06458e2abe3 *help/paths.rds
9a3cce6c078c434e398a148a96c91f54 *html/00Index.html
0aa66e3f9de1547d19e78a7beb0b2fae *html/FilterConstructors.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
e98199a56ab6ac3166479c92700eab46 *html/annnotateWithControlDepth.html
fdf442385bedffeca60732a2ba26a825 *html/callGenotypes.html
037f8380ec665ed8103a8a674eabb10a *html/callSampleSpecificVariants.html
3d8b4263c0b42688eee857fe3f28c30b *html/callVariants.html
baa2d2a7dcaf9a841e5740bf4bef43e4 *html/callWildtype.html
56e517010d5fff6d3112fe2a501b186b *html/concordance.html
0f5fc70e28c54e443357243f1009a4ff *html/extractCoverageForPositions.html
138e1bf9d97eefaa51f4236d4d67fb6e *html/matchVariants.html
e697d3308ac2394326e3c7d404d6da51 *html/pileupVariants.html
6e03c2a5df4b7f8a8b13a0c463723386 *html/postFilterVariants.html
3408cced0b16b23701098d154941b583 *html/qaVariants.html
37c14cc4b3661ec0b672e39f49621aab *html/tallyVariants.html
11c1fbc51ef8862b737a4a158852afcd *html/variantGR2Vcf.html
0ae17f6a1087325982293237cc3176a8 *html/vignette.html
2c4749f07b3615e481b4df89ca88d34d *unitTests/test_calculateConcordanceMatrix.R
2ff6eb94487808d81e15a164c69023f1 *unitTests/test_idVerify.R
cfc6d0f068fbd1c0cf8017e5aae89743 *unitTests/test_variantConcordance.R
a43c2278392bc452656836bbd0ceafae *vcf/header.csv
