# Tools for the analysis of heterogeneous tissues

## Documentation for package ‘TOAST’ version 1.1.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

assignCellType | Align cell types when reference proportions are known
ChooseMarker | Choose cell type-specific markers from pure cell type profiles or single cell data
csDeconv | Improve reference-free deconvolution using cross-cell type differential analysis
csTest | Testing differential signals for specified phenotype and cell type(s).
DEVarSelect | Feature selection for reference-free deconvolution using cross-cell type differential analysis
findRefinx | findRefinx
fitModel | Fit model with proportions and phenotypes.
makeDesign | Generate design matrix from input phenotypes and proportions.
RA_100samples | An example dataset for cellular proportion estimation and multiple factor design