defunct {SingleCellExperiment} | R Documentation

## Defunct methods

### Description

Defunct methods in the SingleCellExperiment package.

### Named size factors

The class now only supports one set of size factors, accessible via `sizeFactors`. This represents a simplification of the class and removes a difficult part of the API (that had to deal with both `NULL` and strings to specify the size factor set of interest).

### Spike-ins

It is recommended to handle spike-ins and other “alternative” features via `altExps`.

### Author(s)

Aaron Lun

[Package SingleCellExperiment version 1.9.3 Index]