ShortReadBase-package {ShortRead} | R Documentation

## FASTQ input and manipulation.

### Description

This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.

### Details

See `packageDescription('ShortRead')`

### Author(s)

Maintainer: Martin Morgan <mtmorgan@fhcrc.org>

[Package ShortRead version 1.45.4 Index]