SIMLR_Estimate_Number_of_Clusters {SIMLR} | R Documentation

## SIMLR Estimate Number of Clusters

### Description

estimate the number of clusters by means of two huristics as discussed in the SIMLR paper

### Usage

    SIMLR_Estimate_Number_of_Clusters(X, NUMC = 2:5, cores.ratio = 1)

### Arguments

`X` | an (m x n) data matrix of gene expression measurements of individual cells
`NUMC` | vector of number of clusters to be considered
`cores.ratio` | ratio of the number of cores to be used when computing the multi-kernel

### Value

a list of 2 elements: K1 and K2 with an estimation of the best clusters (the lower values the better) as discussed in the original paper of SIMLR

### Examples

    SIMLR_Estimate_Number_of_Clusters(BuettnerFlorian$in_X,
       NUMC = 2:5,
       cores.ratio = 0)

[Package SIMLR version 1.13.1 Index]