psimi25InteractionEntry-class {RpsiXML} | R Documentation

## Class "psimi25InteractionEntry"

### Description

A class representing interaction data parsed from PSI-MI 2.5 XML files

### Objects from the Class

Objects can be created by calls of the form `parsePsimi25Interaction`

### Slots

`organismName`:

  Object of class `"character"`, the unique organism name(s) of the interactors

`taxId`:

  Object of class `"character"`, the unique NCBI taxonomy ID(s) of the interactors

`releaseDate`:

  Object of class `"character"`, character, release date of the data entry, recorded in the `entry` element of the XML file

`interactors`:

  Object of class `"list"`, a list of `psimi25Interactor-class` objects, each represents one interactor.

`interactions`:

  Object of class `"list"`, list, a list of `psimi25Interaction-class` objects, each represents one interaction.

### Methods

interactions

  `signature(x = "psimi25InteractionEntry")`: return a list of `psimi25Intearaction` objects, each representing one interaction

interactors

  `signature(x = "psimi25InteractionEntry")`: a method to find all the interactors within the psimi25InteractionEntry and print them

organismName

  `signature(x = "psimi25InteractionEntry")`: returns organism names of the interactors

releaseDate

  `signature(x = "psimi25InteractionEntry")`: returns the release date, serving as a proxy for versioning

show

  `signature(object = "psimi25InteractionEntry")`: a print method

taxId

  `signature(x = "psimi25InteractionEntry")`: returns NCBI taxonomy ID

numInteractors

  `signature(x = "psimi25InteractionEntry")`: returns the number of interactors.

numInteractions

  `signature(x = "psimi25InteractionEntry")`: returns the number of interactions.

pubmedID

  `signature(x = "psimi25InteractionEntry")`: returns the (unique) PubMed IDs of the papers reporting the interactions in the entry.

### Author(s)

Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <jitao_david.zhang@roche.com>

### See Also

`parsePsimi25Interaction`, `S4classpsimi25Interaction-class`

### Examples

    showClass("psimi25InteractionEntry")

[Package RpsiXML version 2.29.0 Index]