psimi25Interaction-class {RpsiXML} | R Documentation

## Class "psimi25Interaction"

### Description

A class representing interaction data

### Objects from the Class

Objects can be created by calls of the form `parsePsimi25Interaction`

### Slots

`sourceDb`:

  Object of class `"character"`, source database

`sourceId`:

  Object of class `"character"`, source database ID

`interactionType`:

  Object of class `"character"`, character, the method used for detecting the interaction ,such as "pull down"

`expPubMed`:

  Object of class `"character"`, PubMed ID of the publication that describes the experiment

`sourceId`:

  Object of class `"character"`, source database ID of the experiment

`confidenceValue`:

  Object of class `"character"`, confidence value of the experimental interaction

`participant`:

  Object of class `"character"`, UniProt IDs of the participants. Important when no bait/prey information is available

`bait`:

  Object of class `"character"`, UniProt ID of the bait

`prey`:

  Object of class `"character"`, UniProt ID(s) of the prey(s)

`inhibitor`:

  Object of class `"character"`, UniProt ID of the inhibitor, NA when missing

`neutralComponent`:

  Object of class `"character"`, UniProt ID of the neutral components, NA when missing

`baitUniProt`:

  An object of class `"character"`

`preyUniProt`:

  An object of class `"character"`

### Methods

interactionType

  `signature(x = "psimi25Interaction")`: finds out interaction type

show

  `signature(object = "psimi25Interaction")`: a print method

sourceDb

  `signature(x = "psimi25Interaction")`: finds out source database

sourceId

  `signature(x = "psimi25Interaction")`: returns ID of the source database

bait

  `signature(x = "psimi25Interaction")`: returns the UniProt ID of the bait

prey

  `signature(x = "psimi25Interaction")`: returns the UniProt ID(s) of the prey(s)

confidenceValue

  `signature(x = "psimi25Interaction")`: returns the confidence value of the interaction

### Author(s)

Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <jitao_david.zhang@roche.com>

### See Also

`parsePsimi25Interaction`,`S4CLASSpsimi25Interactor-class`, `S4CLASSpsimi25Experiment-class`, `S4classpsimi25InteractionEntry-class`

### Examples

    showClass("psimi25Interaction")

[Package RpsiXML version 2.29.0 Index]