psimi25Interactor-class {RpsiXML} | R Documentation

## A class representing interactor from PSI-MI 2.5 XML files

### Description

A class representing interactor from PSI-MI 2.5 XML files

### Slots

`sourceDb`:

  Object of class `"character"`, source database

`sourceId`:

  Object of class `"character"`, ID of the source database

`shortLabel`:

  Object of class `"character"`, short label of the interactor, if not available the slot will be filled with "fullName" node of the file

`uniprotId`:

  Object of class `"character"`, UniProt ID of the interactor

`organismName`:

  Object of class `"character"`, the unique name of the organism name

`taxId`:

  Object of class `"character"`, the NCBI taxonomy ID

`xref`:

  Object of class `"environment"`

### Methods

show

  `signature(x = "psimi25Interactor")`: a print method

sourceDb

  `signature(x = "psimi25Interactor")`: finds out source database

sourceId

  `signature(x = "psimi25Interactor")`: returns ID of the source database

xref

  `sigature(x = "psimi25Interactor")`: returns cross-references of the given interactor

### Author(s)

Jitao David Zhang jitao_david.zhang@roche.com

### Examples

    showClass("psimi25Interactor")

[Package RpsiXML version 2.29.0 Index]