AssayTab-class {Risa} | R Documentation

## Class `"AssayTab"`, a class for maintaing the information of AssayTab

### Description

This class maintains information from an AssayTab dataset, including an investigation file, one or more study files, and one or more assay files for each study file.

### Objects from the Class

Objects can be created by calls of the form `new("AssayTab", ...)`.

### Slots

`path`

  Object of class `"character"`, it represents the path of the ISA-Tab dataset to which this `AssayTab` belongs

`study.filename`

  Object of class `"character"` with the filename of the study to which this assay belongs to.

`study.identifier`

  Object of class `"character"` with the identifier of the study to which this assay belongs to.

`assay.filename`

  Object of class `"character"` with the filename of the assay.

`assay.file`

  Object of class `"data.frame"` with the contents of the assay file.

`assay.technology.type`

  Object of class `"character"` with the technology type of this assay.

`assay.measurement.type`

  Object of class `"character"` with the measurement type of this assay.

`assay.names`

  Object of class `"data.frame"` with the assay names for this assay file.

`data.filenames`

  Object of class `"data.frame"` with the data filenames.

### Methods

[

  `signature(x = "AssayTab")`: ...

getAssayRawDataFilenames

  `signature(.Object = "AssayTab", full.path="logical")`: returns the raw data filenames for this assay

### Author(s)

Alejandra Gonzalez-Beltran, isatools@googlegroups.com

### See Also

`ISATab-class`,`ISATab-methods`,

### Examples

    showClass("AssayTab")
    showClass("MSAssayTab")
    showClass("MicroarrayAssayTab")
    showClass("SeqAssayTab")
    showClass("NMRAssayTab")

[Package Risa version 1.29.0 Index]