80857d043e3b55271cb91476386cd4c3 *CITATION
9f0731d23bd37ddbe37717fb2e421078 *DESCRIPTION
9de12d1faf0e186d8b0cd4fd885aee44 *INDEX
f019f44efd2e49c44d57f29c6e5bb2db *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
bf96cea99ce95dc28838af040ec96892 *Meta/hsearch.rds
9c48d3df0105f4813524311f08df93c4 *Meta/links.rds
2c5e4cfe6a12b69a8bfa102527ff018e *Meta/nsInfo.rds
168b91af9e9876c7ef981c6ce90870d4 *Meta/package.rds
97ff07deaf967a6686dbc780c182ce9c *Meta/vignette.rds
35a79ab38dbab6e7c79b676116a4aff8 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/Ringo
2b348f7e6402505fea772ebc1f2f46c5 *R/Ringo.rdb
799bc6807ab4af82f67ba336d2e2e093 *R/Ringo.rdx
089e29bd75b0820e1f9801c950320f65 *agilentData/H3K4Me3_Tc1Liver_sol1_mmChr17_part.txt
5415524a104b5816a944f4971595d5ec *agilentData/arrayDescriptionAMEXP1029_part.txt
5a2434a37ee75088c3af5efcccc5240d *agilentData/mm9chr17.RData
c5eb37db0745300dbd8bb02ee3ff18e1 *agilentData/targets.txt
ac8b5e5600b8749e7c2f5bd1a84d616f *doc/Ringo.R
3839816a13a162c65bbab97c7a0986a5 *doc/Ringo.Rnw
946057b01628c52023c38232ce6c8fc5 *doc/Ringo.pdf
18fbaa454af6ec37d30f1798fedc3716 *doc/index.html
b8ad09fcb16b97300782f378c5505754 *exData/MOD_2003-12-05_SUZ12_1in2.ndf
93dcafa177f6105c8602c097f9b79b98 *exData/MOD_2003-12-05_SUZ12_1in2.pos
fe86e5c1cf343c486c4985a9e5a427b8 *exData/MOD_20551_PMT1_pair.txt
3f7ebd178b21eaf7d160d607a2e42ef4 *exData/MOD_20742_PMT1_pair.txt
8e164612155b94980a9cb3b9b7a148cb *exData/README.txt
f39530a6d35b8a18e8dd075205b37bd3 *exData/exampleProbeAnno.rda
b1f0e9e8dafc00780930776bfd6e9aa5 *exData/exampleX.rda
8455900bba7d71a31bbcffdbece9420e *exData/example_targets.txt
4bb3efa4b569917acddee6e3d9d5db33 *exData/reportersInexactMatchesHg18.rda
d020c2bea3ee4cc5de50e947df20e391 *exData/spottypes.txt
6ec1bba00f10d458b6a04793e3e9a231 *help/AnIndex
70000f4867ebd4c582c4150a020873aa *help/Ringo.rdb
38bc64a834f64af69534eac3bf1fdba5 *help/Ringo.rdx
986f75cfdcb8565d8a154754bdd1c07a *help/aliases.rds
c827c07df95e213365e4a9ef430c1818 *help/paths.rds
7ec25de96262f7dd863442ea5e73700f *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
d785ee6c91ed3460e77862dd363b69fe *html/Ringo-internal.html
93b281384086c1c3262e067e29ee0960 *html/arrayImage.html
64d231aeebd056d768fc530e2ea55e6e *html/asExprSet.html
399d5932a25d8082683da88c54c4bedb *html/autocorr.html
299786aa3956745703b402a08aab5bbf *html/cherByThreshold.html
ab5fef7f4abaa19125f71da115b1f26f *html/cherClass.html
9afca11b34ecb63704fea652ab57c186 *html/chipAlongChrom.html
34cb560184641ed8ee517b19535f4661 *html/chipAlongChromOld.html
316ccf6cfb432f4ae2e92a82330d1425 *html/computeRunningMedians.html
07e74666bf872da4dcc6f78d1e05150b *html/compute_gc.html
0a6d56042e6f104d332ab435f001d528 *html/compute_sliding_t.html
49ebcf87134fbb233327e59ceddcdc01 *html/corrPlot.html
533a7c7affa6a8a39f2ee111bc15f1d2 *html/exportCherList.html
b8bd461bc338ab37a01fbdad375ec086 *html/extractProbeAnno.html
f65a5bfa0e1d761364881095fa371e15 *html/features2Probes.html
90b477df47471a9d99b547b3abbe8adc *html/findChersOnSmoothed.html
db72e80660af3de8999033bd084387f6 *html/ftr2xys.html
34939064a07a0a021cccad8cff54c867 *html/getFeats.html
7fb58adf2987bc2f6b1a795eda5de799 *html/newCER.html
d15cea01baa70bd98970ddf16e836c08 *html/nimblegenNorm.html
b0d30e11f494fda752404812062138b0 *html/nonzero.html
af9d02f6132bf33770cd0e08319c6f8a *html/plotAutocorr.html
cde133f1e1415c8cfd624906cb561f2c *html/plotBM.html
a6596c7ed48a97da39e25794dbbbe5c8 *html/plot_cher.html
9c5dc9d9d86527e3b7c72b2332361210 *html/posToProbeAnnoEnvironment.html
25876d94c293e60ddf07ff314c9b47e1 *html/preprocess.html
410a3860a2b6dd7995909f2c9bb64705 *html/probeAnnoClass.html
3a363a4b3c795f20c34e95a411bc25a8 *html/qopS4.html
7082c2c6a8f36eebb80712add5f18c1e *html/quantilesOverPositions.html
142225af3ed1e73ae846a2987fb3079b *html/readNimblegen.html
70c0ba3673b776d8f8f91e4e85ac7157 *html/regionoverlap.html
9a10c0330150b2e24642349eddcb3f0c *html/relateCERs.html
aa0fa0f47dcc929d1bebfd090eb33cf6 *html/sigGOTable.html
6fb6a0d456d8f5f25636a5b70f4c3bf4 *html/sliding_meansd.html
d542610c4410be8cd363f85ce859dab9 *html/sliding_quantile.html
158a9f802f01a909a82ae2f027ff350d *html/twoGaussiansNull.html
4f5033c61c364295d9a7e43e38a16d2b *html/upperBoundNull.html
9a4140984225876796946f4cec37eec3 *html/validProbeAnno.html
789b18868a6d43b59b8e64e8580ac63d *libs/i386/Ringo.dll
db388e9564797fd4ee02697d37d3d032 *libs/x64/Ringo.dll
a4e348745bcee4d7022d2807ffd80359 *scripts/condenseBlatOutput.pl
26ace4b02da8e5d607f0566ccadc4e6a *scripts/condenseExonerateOutput.pl
ac0161dfde18540822564e99cdc6ae6f *scripts/condenseMUMmerOutput.pl
eebb5df013fcec9efeb3462c04cd9fb5 *scripts/convertSampleKeyTxt.R
abc83ca087b05944e99b736a18ec9cc0 *scripts/extractProbeSequenceFasta.pl
651d61b0dda52b6e924b69196870505d *scripts/graphChers2Transcripts.R
ed1c3d0e9bff0018ccf916c22a828c28 *scripts/makeProbeAnno.R
f69c0dd79ddeb4513eb72316c1a4b791 *scripts/mapReportersWithBiostrings.R
a97db632c7fe0facd9d1db343eeebc17 *scripts/retrieveGenomicFeatureAnnotation.R
