RTNsurvival-package     Performs survival analysis using
                        transcriptional networks inferred by the RTN
                        package.
TNS-class               TNS: An S4 class for survival analysis using
                        transcriptional networks inferred by the RTN
                        package.
hclust_semisupervised   Semi-supervised hierarchical clustering
survival.data           A pre-processed dataset for demonstration
                        purposes only.
tni2tnsPreprocess,TNI-method
                        Preprocessing of TNS class objects
tnsAREA3,TNS-method     Compute regulon activity by calling aREA
                        (analytic Rank-based Enrichment Analysis)
                        algorithm
tnsCox,TNS-method       Cox regression analysis for TNS class objects
tnsCoxInteraction,TNS-method
                        Cox regression analysis for dual regulons
tnsGSEA2,TNS-method     Compute regulon activity using 2-tailed Gene
                        Set Enrichment Analysis
tnsGet,TNS-method       Get information from slots in a TNS object
tnsInteraction,TNS-method
                        Survival analysis for dual regulons
tnsKM,TNS-method        Kaplan-Meier analysis for TNS class objects
tnsKmInteraction,TNS-method
                        Kaplan-Meier analysis for dual regulons
tnsPlotCovariates,TNS-method
                        Plot regulon activity and categorical
                        covariates
tnsPlotCox,TNS-method   Cox plots for TNS class objects
tnsPlotCoxInteraction,TNS-method
                        Plot results from Cox regression analysis for
                        dual regulons
tnsPlotGSEA2,TNS-method
                        Plot 2-tailed GSEA for a sample from a TNS
tnsPlotKM,TNS-method    Kaplan-Meier plots for TNS class objects
tnsPlotKmInteraction,TNS-method
                        Plot results from Kaplan-Meier analysis for
                        dual regulons
tnsPlotSRE,TNS-method   Plot Subgroup Regulon Enrichment for TNS-class
                        objects
tnsSRD,TNS-method       Subgroup Regulon Difference for TNS-class
                        objects
tnsSRE,TNS-method       Subgroup Regulon Enrichment for TNS-class
                        objects
tnsStratification       Sample stratification for a TNS object
