tnsPlotKmInteraction,TNS-method {RTNsurvival} | R Documentation

## Plot results from Kaplan-Meier analysis for dual regulons

### Description

Plot results from Kaplan-Meier analysis for dual regulons

### Usage

    ## S4 method for signature 'TNS'
    tnsPlotKmInteraction(
      tns,
      dualreg = NULL,
      fname = "kmInteraction",
      fpath = ".",
      xlab = "Months",
      ylab = "Survival probability",
      colorPalette = "bluered",
      width = 4,
      height = 4,
      plotpdf = FALSE
    )

### Arguments

`tns` | A TNS object, which must have passed GSEA2 analysis.
`dualreg` | A character string with the name of a dual regulon.
`fname` | A string. The name of the file in which the plot will be saved
`fpath` | A string. The path to the directory where the plot will be saved
`xlab` | A string. The label for the x axis on the third panel. This should be the measure of time shown in the survival data.frame after the last check-up.
`ylab` | A string. The label for the y axis on the third panel
`colorPalette` | A string, which can be 'red', 'blue', 'redblue', or 'bluered'. Alternatively, it can be a vector of five colors or hex values.
`width` | A numeric value. Represents the width of the plot.
`height` | A numeric value. Represents the height of the plot.
`plotpdf` | A logical value. If TRUE, the plot is saved as a pdf file. If false, it is plotted in the plotting area.

### Value

A plot, showing a graphical analysis for the 'tnsKmInteraction' function.

### Examples

    # load survival data
    data(survival.data)

    # load TNI-object
    data(stni, package = "RTN")

    stns <- tni2tnsPreprocess(stni, survivalData = survival.data,
    keycovar = c('Grade','Age'), time = 1, event = 2)
    stns <- tnsGSEA2(stns)

    # KM analysis for dual regulons
    # stns <- tnsKmInteraction(stns, stepFilter=FALSE)
    # tnsPlotKmInteraction(stns, dualreg = "FOXM1~PTTG1")

[Package RTNsurvival version 1.11.2 Index]