avs.plot1 {RTN} | R Documentation

## Plot results from AVS methods, single plots.

### Description

This function takes an AVS object and plots results from the VSE and EVSE methods.

### Usage

    avs.plot1(object, what="vse", fname=what, ylab="genomic annotation",
    xlab="Number of clusters mapping to genomic annotation", breaks="Sturges",
    maxy=200, pValueCutoff=1e-2, width=8, height=3)

### Arguments

`object` | an object of class 'AVS' `AVS-class`.
`what` | a character value specifying which analysis should be used. Options: "vse" and "evse".
`fname` | a character value specifying the name of output file.
`ylab` | a character value specifying the y-axis label.
`xlab` | a character value specifying the x-axis label.
`breaks` | breaks in the histogram, see `hist` function.
`maxy` | a numeric value specifying the max y-limit.
`pValueCutoff` | a numeric value specifying the cutoff for p-values considered significant.
`width` | a numeric value specifying the width of the graphics region in inches.
`height` | a numeric value specifying the height of the graphics region in inches.

### Value

A plot showing results from the VSE and EVSE methods.

### Author(s)

Mauro Castro

### Examples

    # see 'avs.vse' and 'avs.evse' methods.

[Package RTN version 2.11.5 Index]