RGSEA-package {RGSEA} | R Documentation

## Random Gene Set Enrichment Analysis (RGSEA)

### Description

This is the package for similarity identifucation and classification of transcriptome data

### Details

Package: | RGSEA
Type: | Package
Version: | 1.0
Date: | 2014-04-22
License: | GPL(>=3)

~~ An overview of how to use the package, including the most important functions ~~

### Author(s)

Chengcheng Ma Maintainer: tcmcc1986@gmail.com

### References

~~ Literature or other references for background information ~~

### See Also

Song L, Langfelder P, Horvath S. Random generalized linear model: a highly accurate and interpretable ensemble predictor[J]. BMC bioinformatics, 2013, 14(1): 5. Subramanian A, Tamayo P, Mootha V K, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles[J]. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102(43): 15545-15550.

### Examples

    if(interactive()) {
        data(e1)
        data(e2)
        RGSEAfix(e1,e2, queryclasses=colnames(e1), refclasses=colnames(e2),
    random=20000, featurenum=1000, iteration=100)->test
    }

[Package RGSEA version 1.21.0 Index]