runPathoStat {PathoStat} | R Documentation

## Statistical Microbiome Analysis on the pathostat input and generates a html report and produces interactive shiny app plots

### Description

Statistical Microbiome Analysis on the pathostat input and generates a html report and produces interactive shiny app plots

### Usage

    runPathoStat(pstat = NULL, report_dir = ".",
      report_option_binary = "111111111", interactive = TRUE)

### Arguments

`pstat` | phyloseq extension pathostat object
`report_dir` | Output report directory path
`report_option_binary` | 9 bits Binary String representing the plots to display and hide in the report
`interactive` | when TRUE, opens the interactive shinyApp

### Value

outputfile The output file with all the statistical plots

### Examples

    runPathoStat(interactive = FALSE)

[Package PathoStat version 1.13.1 Index]