0dfedde99ebce67d78795d5d5c74922d *DESCRIPTION
1adc7f1dd2255de597a3eda9e40aa1f7 *INDEX
16751d594736dd287db6af40f68c3990 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
ff751bc9e50d8185622ad66e36f0761e *Meta/hsearch.rds
cce1f3ab0ac5ef2ce140ec94d3ca77e0 *Meta/links.rds
f2f0a63d0fd27d71797f4a0d11e69b8d *Meta/nsInfo.rds
0ad5279060a0d12a712fd5edbf9a8ebb *Meta/package.rds
50f0b28f894070419f66434f82231172 *Meta/vignette.rds
592791f90550f9649773a2d69234e38b *NAMESPACE
b7fb900790a740d862746997648dec09 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/PWMEnrich
c79308af31274a595cc4eb32fcce7855 *R/PWMEnrich.rdb
26034997ad7e7532e5683df3510b930f *R/PWMEnrich.rdx
fab7dcd868071f0d37ee37d0cc4c957c *doc/PWMEnrich.R
d9a566a297ac54a9857f2f551dd0773b *doc/PWMEnrich.Rnw
065c8c3885092e2d5854ba15487c5700 *doc/PWMEnrich.pdf
c6c53b28bd3ae2ad02412e78605b93d9 *doc/index.html
97ea684f7a8218dfe8a5255377f24c7a *extdata/bg.seq-test.RData
16737864e28ca293c3d43c9dc274e810 *extdata/example.fa
08048d68adc5c8493db6f4350732af86 *extdata/example.transfac
415a8826cfb40c10021953ac725c3f78 *extdata/jaspar-insecta.jaspar
378529a644ccceb87d72f3204dda1d59 *extdata/pfm_vertebrates.txt
d5940ef608cce77504b0927133c8dadb *extdata/stripe2.fa
2e6e376108f87945c08ffde1cd39a097 *extdata/tinman-early-top20.fa
bccfd13ec6ce43fcaddf0fe2779c6856 *help/AnIndex
3c4d84a89749336728b3ae8d50742cc8 *help/PWMEnrich.rdb
b329153fc6126672ac7c8407be45b474 *help/PWMEnrich.rdx
6d4083fc9eefa37f03824fc9e717003e *help/aliases.rds
5eb2455bc35be9885d83ee56d08f8375 *help/paths.rds
2088a3f232f868e17fab1fa81cd15781 *html/00Index.html
97f847a2dfbbacbf05a0cd8ec95fd688 *html/MotifEnrichmentReport.html
dfa70f256b9c31431d4c5c1919f70d6c *html/MotifEnrichmentResults.html
d46cc8e264921955cf4f1f6f62172270 *html/PFMtoPWM.html
45ecb74695857788e31aaecb02d874ea *html/PWM.html
2dfc48d166cba95d728d21b8620c897d *html/PWMCutoffBackground.html
be22aab23a7d3bbe55a127afb73f1a4c *html/PWMEmpiricalBackground.html
b2be867d4d09e92f696b4af701eb07e2 *html/PWMGEVBackground.html
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5f84dd72a3bc346b4a675887d5678e3d *html/PWMUnscaled.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
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8f8f1acdf79f77d3cdbf6ef07f8ab661 *html/getBackgroundFrequencies.html
0191588bc5615fa171f27d523c257ea0 *html/groupReport-commaMotifEnrichmentResults-method.html
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554b1f0409aab913fae776ffda045e28 *html/makePWMCutoffBackground.html
a22b819d09b5291f94f07b1c2e7bf54e *html/makePWMEmpiricalBackground.html
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99b8c84eae57a0ae6540801411a835bc *html/makePWMLognBackground.html
5eede33090331bfc3919cd27e765b56b *html/makePWMPvalCutoffBackground.html
02134d1240466a4dc3fdc37b9a3beb1b *html/makePWMPvalCutoffBackgroundFromSeq.html
600de9d32c7a55c61d35e62be6129e02 *html/makePriors.html
5a39bc058417985f67db96401e9e8ec8 *html/motifDiffEnrichment.html
9b854f4f6336d05ea574676b5a42fda1 *html/motifEcdf.html
4ff5645787bd47b9068007b3781d5933 *html/motifEnrichment.html
00fbf2c73bcbf1c5ae4152dd1f3ebf46 *html/motifIC.html
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49d2d9764ce22be6524a66ff28d6506d *html/motifRankingForSequence-commaMotifEnrichmentResults-method.html
2e2d6e26e7559ba87ea590fe03ae572e *html/motifScores.html
0ef098e539068b6dd5906ec326786423 *html/motifSimilarity.html
cbbb8ceb4e2e64beceb2d5da6d26adce *html/operators-MotifEnrichmentReport.html
4cd0ea0bcb4d527a3f3bf18f4b0eb4bc *html/operators-MotifEnrichmentResults.html
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31396996227149083846e322d6515fcc *html/operators-PWMEmpiricalBackground.html
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6f8d739c76cd17c6809c1bbb777d2852 *html/plot.html
2aeac9c50d1d89a1abe078fcb05978af *html/plotMotifScores.html
6299b5676ab0af4740fbcf25106053bd *html/plotMultipleMotifs.html
394aa9765039a9a17e09ddebf6c67e72 *html/plotTopMotifsGroup-commaMotifEnrichmentResults-method.html
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ba9ee3f018bae16193af4ea59a1b4399 *html/readMotifs.html
600ee8019171daa0f8e7ada2d6b807cd *html/registerCoresPWMEnrich.html
3814772cd02ea3244129af8e241a8cc7 *html/reverseComplement.html
590658749f58e4c16eff5599e60c1ef0 *html/scanWithPWM.html
c70dda28c903026f40979414fea18468 *html/seqLogoGrid.html
5bd00a4020d7be8d204aa89f9d385f13 *html/sequenceReport-commaMotifEnrichmentResults-method.html
a48d641246ce7dcea25ae14143aea383 *html/subsetting-PWMCutoffBackground.html
4c84d19d5b8b13285c3ca4a0e04f1db7 *html/subsetting-PWMEmpiricalBackground.html
f4715d03895ace56e3d76ade0faba97f *html/subsetting-PWMGEVBackground.html
20aa51fcd6ee0169aa40e5fb24f2a66a *html/subsetting-PWMLognBackground.html
b1b629e37ce0be0bc64838895dd577aa *html/toPWM.html
cc803d3640a38b58f05a265895a391d8 *html/useBigMemoryPWMEnrich.html
f980cf6e1a56c37da2588b23b5e3525c *tests/test_clover.R
5ac6eb9e4d6cfbd62cf60c4c26bd8dba *tests/test_invalidInput.R
0b26bedee71d0a29f0c38fc32cda75ed *tests/test_motifEnrichment.R
2d850d37342371c6afeb0e055c33c19b *tests/test_similarity.R
