aberrant	aberrant
computeGeneLength	computeGeneLength
computeLatentSpace	computeLatentSpace
computePvalues	computePvalues
computePvalues,OutriderDataSet-method	computePvalues
computeZscores	computeZscores
computeZscores,OutriderDataSet-method	computeZscores
controlForConfounders	controlForConfounders
counts	counts
counts,OutriderDataSet-method	counts
counts<-,OutriderDataSet,matrix-method	counts
dispersion,	getter_setter_functions
dispersions,OutriderDataSet-method	getter_setter_functions
estimateBestQ	estimateBestQ
estimateSizeFactors	sizeFactors
estimateSizeFactors,OutriderDataSet-method	sizeFactors
filterExpression	filterExpression
filterExpression,OutriderDataSet-method	filterExpression
findEncodingDim	findEncodingDim
findEncodingDim,	findEncodingDim
findInjectZscore	findEncodingDim
fit	fit
fit,OutriderDataSet-method	fit
fpkm	fpkm
fpm	fpkm
getBestQ	getter_setter_functions
getter_setter_functions	getter_setter_functions
makeExampleOutriderDataSet	makeExampleOutriderDataSet
normalizationFactors	normalizationFactors
normalizationFactors,OutriderDataSet-method	normalizationFactors
normalizationFactors<-,OutriderDataSet,data.frame-method	normalizationFactors
normalizationFactors<-,OutriderDataSet,DataFrame-method	normalizationFactors
normalizationFactors<-,OutriderDataSet,matrix-method	normalizationFactors
normalizationFactors<-,OutriderDataSet,NULL-method	normalizationFactors
OUTRIDER	OUTRIDER
OutriderDataSet	OutriderDataSet-class
OutriderDataSet-class	OutriderDataSet-class
padj	getter_setter_functions
padj,	getter_setter_functions
plotAberrantPerSample	plotFunctions
plotCountCorHeatmap	plotFunctions
plotCountGeneSampleHeatmap	plotFunctions
plotDispEsts	plotFunctions
plotDispEsts,OutriderDataSet-method	plotFunctions
plotEncDimSearch	plotFunctions
plotExpectedVsObservedCounts	plotFunctions
plotExpressedGenes	plotFunctions
plotExpressionRank	plotFunctions
plotFPKM	plotFunctions
plotFunctions	plotFunctions
plotPowerAnalysis	plotFunctions
plotQQ	plotFunctions
plotSizeFactors	plotFunctions
plotVolcano	plotFunctions
pValue	getter_setter_functions
pValue,	getter_setter_functions
results	results
results,	results
results,OutriderDataSet-method	results
results.OutriderDataSet	results
sampleExclusionMask	sampleExclusionMask
sampleExclusionMask,	sampleExclusionMask
sampleExclusionMask<-	sampleExclusionMask
sizeFactors	sizeFactors
sizeFactors,OutriderDataSet-method	sizeFactors
sizeFactors<-	sizeFactors
sizeFactors<-,OutriderDataSet,NULL-method	sizeFactors
sizeFactors<-,OutriderDataSet,numeric-method	sizeFactors
theta	getter_setter_functions
theta,	getter_setter_functions
zScore	getter_setter_functions
zScore,	getter_setter_functions
`sampleExclusionMask<-`	sampleExclusionMask
