convertGeneID {NoRCE} | R Documentation

## Convert gene ids according to the gene type

### Description

Convert gene ids according to the gene type

### Usage

    convertGeneID(
      genetype = c("Entrez", "mirna", "Ensembl_gene", "Ensembl_trans", "NCBI"),
      genelist,
      org_assembly = c("hg19", "hg38", "mm10", "dre10", "rn6", "dm6", "ce11", "sc3")
    )

### Arguments

`genetype` | Type of the input gene list. Possible values are "Entrez", "mirna", "Ensembl_gene", "Ensembl_trans", "NCBI". For HUGO gene symbol "NCBI" value, for Entrez gene id "Entrez", for mirbase id "mirna" is used.
`genelist` | Input gene list
`org_assembly` | Genome assembly of interest for the analysis. Possible assemblies are "mm10" for mouse, "dre10" for zebrafish, "rn6" for rat, "dm6" for fruit fly, "ce11" for worm, "sc3" for yeast, "hg19" and "hg38" for human

### Value

GRange object of the given input

### Examples

    convGene <-convertGeneID(genetype = "mirna",
                             genelist = brain_mirna[1:30,],
                             org_assembly = 'hg19')

[Package NoRCE version 0.99.26 Index]