convertGMT {NoRCE} | R Documentation

## Convert gmt formatted pathway file to the Pathway ID, Entrez, symbol formatted data frame

### Description

Convert gmt formatted pathway file to the Pathway ID, Entrez, symbol formatted data frame

### Usage

    convertGMT(gmtName, org_assembly, isSymbol = FALSE)

### Arguments

`gmtName` | Custom pathway gmt file
`org_assembly` | Genome assembly of interest for the analysis. Possible assemblies are "mm10" for mouse, "dre10" for zebrafish, "rn6" for rat, "dm6" for fruit fly, "ce11" for worm, "sc3" for yeast, "hg19" and "hg38" for human
`isSymbol` | Boolean variable that hold the gene format of the gmt file. If it is set as TRUE, gene format of the gmt file should be symbol. Otherwise, gene format should be ENTREZ ID. By default, it is FALSE.

### Value

return data frame

[Package NoRCE version 0.99.26 Index]