plot_192_profile {MutationalPatterns} | R Documentation

## Plot 192 trinucleotide profile

### Description

Plot relative contribution of 192 trinucleotides

### Usage

    plot_192_profile(mut_matrix, colors, ymax = 0.2, condensed = FALSE)

### Arguments

`mut_matrix` | 192 trinucleotide profile matrix
`colors` | 6 value color vector
`ymax` | Y axis maximum value, default = 0.2
`condensed` | More condensed plotting format. Default = F.

### Value

192 trinucleotide profile plot

### See Also

`mut_matrix_stranded`, `extract_signatures`

### Examples

    ## See the 'mut_matrix_stranded()' example for how we obtained the
    ## mutation matrix with transcriptional strand information:
    mut_mat_s <- readRDS(system.file("states/mut_mat_s_data.rds",
                                        package="MutationalPatterns"))

    ## Extract the signatures.
    ## This is a computationally intensive task, so we load a precomputed
    ## version instead.
    # nmf_res_strand <- extract_signatures(mut_mat_s, rank = 2)
    nmf_res_strand <- readRDS(system.file("states/nmf_res_strand_data.rds",
                                        package="MutationalPatterns"))

    ## Optionally, provide signature names
    colnames(nmf_res_strand$signatures) <- c("Signature A", "Signature B")

    ## Generate the plot
    plot_192_profile(nmf_res_strand$signatures)

[Package MutationalPatterns version 1.99.3 Index]