86b789be871eb5cb188890537afe1290 *DESCRIPTION
0d7d43da21bd608b62293cb8cec2beae *INDEX
309bee6a87866232605a26bcc7542673 *Meta/Rd.rds
d3c44f162391f4205a5131aad47a39b4 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
39d3bf027586c39fe278278bd74809ef *Meta/hsearch.rds
22d5f259e561e93d708d19bc77333131 *Meta/links.rds
c157d1798e693ab80f24ac5aa03f4541 *Meta/nsInfo.rds
92f542f6233b7eae01cce9ce3ccffe05 *Meta/package.rds
06ab9e69708eafdc9a6d1abe2184e9be *Meta/vignette.rds
cdcb42b04205359c7a4e7c9b1b1aa622 *NAMESPACE
64850b61b619186ba39a356d074c88f6 *NEWS
e1f4dde66e67d1b13d90354b38dcbefd *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/MinimumDistance
4b2f3bb973b822dafceff21ff605a8b7 *R/MinimumDistance.rdb
a217cb16c0627e51a3d908896229d164 *R/MinimumDistance.rdx
0e57e8c0ac03566174a91534cd0fff56 *data/md_exp.rda
d1eb803d6c58ff8f8174f739ad7a3699 *data/md_gr.rda
8a3e3917ec140296abace15fe80a7154 *data/trioSetListExample.rda
0163422786483a5396045cd6ddf930f2 *doc/MinimumDistance.R
f81c1183bb9c95f3c3fd1f34b314d679 *doc/MinimumDistance.Rnw
1f87a654e5108fcb429dc6cd31780caa *doc/MinimumDistance.pdf
495dce7ecfea26efbcd55f37b50ad9b3 *doc/index.html
e03ea25b8db06926dae3d1aafebd9c33 *extdata/F.txt
efc08f8a945c313599533f15913a337c *extdata/M.txt
95db2e3447bae89e33de8a32f7c27b22 *extdata/O.txt
85bbbd3aa787fd480ae50bb2ffcd8090 *extdata/O1.txt
54e6869d2875b8cd3642e6d6fc185860 *extdata/baf.rda
ffd852d6ef47afc2784d7424175a813b *extdata/exampleFiles.R
002e045dee6803f685d493dcf6940913 *extdata/logRratio.rda
1f4fa7c977cf5e93d1c7a01856de7339 *extdata/md_granges.rds
52ee010584bb394d03f0a8eea59b735a *extdata/mdgr.rds
af6d332ea2ddb50e64beefa03b484777 *extdata/pedigreeInfo.rda
8bb642a23b584fcbaf5fb2f7b7e1bd01 *extdata/pennCNV_MendelianProb.rda
52c879d772258c1e361cf27fc7aeff24 *extdata/sample.sheet.rda
26714615fc7a01e7c93b8d8035ea3f27 *extdata/trioSet12023chr12.rda
25b53aab37b8c902341b54cc3edf8ef6 *help/AnIndex
f386341a5b5dcc1154263a3b34522fc1 *help/MinimumDistance.rdb
e328605663116916fe672ee2d52b5016 *help/MinimumDistance.rdx
9dc059b0ffce06899b45b6713315c55a *help/aliases.rds
2dd3b46c9fa69c09d9376087fc121d87 *help/paths.rds
0e51bbe814aebc88b339f7ad0bb288a2 *html/00Index.html
1ea26bf4917a3bf8fb62522bec97b461 *html/DNAcopyParam.html
20e8837da5bd830d3b01eb92b904efe6 *html/Defunct.html
d3c05a4a3b7469010913a0d10e260779 *html/Deprecated.html
6906f7c3f789db5cb3926e5d9f0f24ee *html/FilterParamMD-class.html
222e76a492d5b073c896414bab912c70 *html/FilterParamMD.html
01cc50442300f5a4ce12ef87e93a5fa5 *html/MAP.html
c0161fa08ae067ac49ca2c4a4c82c02a *html/MAP2.html
aaa236153959ecf1ea5163de44ff620c *html/MDRanges-class.html
3a1082c6b281b326df71c4171d1cf9df *html/MinDistExperiment-class.html
94624dd13cadf90b093713d0e5026849 *html/MinDistExperiment.html
08a565f7a84e504a70df4e004854bf87 *html/MinDistGRanges-class.html
3055a64e76930dc9e4296f1353de2245 *html/MinDistGRanges.html
a00f3e57fbe5db3b2cd4c354f6473fa5 *html/MinDistParam-class.html
48129439b089ed6a98be8eb1d1ad2211 *html/MinDistParam.html
72b18537adb2956c50941b0d9eacfd1f *html/MinDistPosterior-class.html
f77663ce221ef4fd4c9368e26bf52d33 *html/MinimumDistance.html
ecc9bd251565aeb04659d847f1b968e0 *html/ParentOffspring-class.html
e7a073497f6f4f5350b00736a20f26fd *html/ParentOffspringList-class.html
572491d110edf56d840657a9b6cdacf3 *html/Pedigree-class.html
3e8f1b3119894a079c1e61ea0377bb92 *html/Pedigree.html
41f00e164acf72841c9a03a7a4a2e76b *html/PennParam.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
d4c1e253c051b5206fa2378b4fe4c71d *html/TrioSet-class.html
0db82fd0bdfeb015ce48075d904832ec *html/TrioSet.html
ec1706b0d4fd8823f2f7d58472024fbb *html/TrioSetList-class.html
deecabee1edf56583c2acf8ce18c3c9c *html/TrioSetList.html
6db1282f2a9f346c4e62feda20fb3c0d *html/TrioSetListLD.html
09938ef49061c7b8212c769cbaca5941 *html/acf2.html
460c3608ff50378ad639cdc94626f28c *html/calculateMindist.html
b4cf98050bf800769033a43d8e6a7046 *html/coercion-methods.html
8aaa0ac27418eba52e13a9e08c966734 *html/denovo.html
c14f2112966fdc4aa0194a3bef8f5ad6 *html/exampleTrioSetList.html
5d0e05dbc1c6241ee7c17372d8262edf *html/filterExperiment.html
af47f1b6877e0b44ff33e4bb7a4eebdd *html/mad2.html
02d674fc286dbf109bbe942629f85047 *html/mdLegend.html
51a44292e6751efaa920349326986298 *html/md_exp.html
39d7b1a0cea662476e32270e93e474da *html/md_gr.html
66451b5ee3446cfd446a522dc638beac *html/mindist.html
85b55dc19e7a355d4c48ce66e8a44ede *html/nMAD.html
046336b9f2844ccaa72fd46c1dba6943 *html/pedigreeGrid.html
970e134e83d51ce6aba75945e7bcd200 *html/pedigreeName.html
322f66735293c12f9b30ecbf72639f75 *html/pedigreeViewports.html
d7a114bc17436634dde27afbc70abb8c *html/plotDenovo.html
0d1833890aa4ed6d695f0c70c5823a81 *html/range-ILimit-method.html
7763ece0450282f34c15c630120f2d1a *html/segment2.html
8b1703686f0ca0a0e7b3e9e9ff381eaa *scripts/Affy2.R
15ff3c916756840de8888648ce5db0ed *scripts/Discordance.Rnw
de1aeda81e8c8ab6ded25df5ae2dbfab *scripts/Sweave.sty
a099ccea8ee43f05d160bcd257bb7afd *scripts/affy.R
3f33c8b63c426893a035c8f308a28ff5 *scripts/cleft_notParallel.Rnw
7e24f8634a31c17e346eb2286684ad37 *scripts/logR.baf.rda
ba7dfa59e03a85041de313b351b0f3c7 *scripts/runDiscordance.R
e1af4b14d6f30a4e4e0d1c044f671c51 *unitTests/Makefile
68b329da9893e34099c7d8ad5cb9c940 *unitTests/test_FilterParam.R
77e62a5014e356ab9d18448b2c0b384d *unitTests/test_MinDistExperiment.R
f1475ea1d62c4ffd452d99f92cd8350b *unitTests/test_Pedigree-class.R
781a05f56baa5e0dd8ec83790c5df78a *unitTests/test_PedigreeViews.R
77dfc64a92be3f977d0c916f43b20229 *unitTests/test_SnpArrayExperiment.R
e06a2b41fe11be4b705479117744ee1f *unitTests/test_TrioSetList.R
dc3c4b8f7bb58771e718df5fdc795973 *unitTests/test_calculateMindist.R
4540f66b68b46c13b9b426fe03cd204e *unitTests/test_callDenovoSegments.R
4587128861c0c33e9b8214229b5235a2 *unitTests/test_few_markers.R
c3e51589426259ed53a1a0441688468b *unitTests/test_posteriorCalls.R
f5434d8f5bb250791776114ce8fdb246 *unitTests/test_quads.R
68b329da9893e34099c7d8ad5cb9c940 *unitTests/test_rdsViews.R
2d2179773cc4e441499d731ccba69f3c *unitTests/test_splitsForCBS.R
