writeRnkFiles {MineICA} | R Documentation

## Write rnk files containing gene projections

### Description

Writes the gene projection values of each component in a '.rnk' file for GSEA.

### Usage

      writeRnkFiles(icaSet, abs = TRUE, path)

### Arguments

`icaSet` | An object of class `IcaSet`
`abs` | If TRUE (default) the absolute projection values are used.
`path` | The path that will contain the rnk files.

### Details

The .rnk format requires two columns, the first containing the gene IDs, the second containing the projection values. The genes are ordered by projection values. The files are named "index-of-component_abs.rnk" if `abs=TRUE`, or "index-of-component.rnk" if `abs=FALSE`.

### Value

NULL

### Author(s)

Anne

[Package MineICA version 1.27.0 Index]