MethPed_sample {MethPed} | R Documentation

## Sample dataset to MethPed package.

### Description

Methylation beta-values generated with the Infinium HumanMethylation450 BeadChips (Illumina).

### Usage

    data(MethPed_sample)

### Format

A data frame with 468821 probes and 2 tumor samples

### Value

DNA Methylation beta-values

### References

[1] Anna Danielsson, Szilárd Nemes, Magnus Tisell, Birgitta Lannering, Claes Nordborg, Magnus Sabel, and Helena Carén. "MethPed: A DNA Methylation Classifier Tool for the Identification of Pediatric Brain Tumor Subtypes". Clinical Epigenetics 2015, 7:62, 2015

### See Also

See http://www.clinicalepigeneticsjournal.com/content/7/1/62 for more details.

### Examples

    #################### Loading and view sample data
    data(MethPed_sample)
    head(MethPed_sample)

    #################### Check dimention of sample data
    dim(MethPed_sample)  # Check number of probes and samples in data

    #################### Checking missing value in the data
    missingIndex <- checkNA(MethPed_sample)

[Package MethPed version 1.15.0 Index]