# Gene Expression Meta-analysis Visualization Tool

## Documentation for package ‘MetaVolcanoR’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

calc_vi | A function to calculate variance from confidence interval limits
collapse_deg | A function to filter out geneIDs standing for the same gene name
combining_mv | A function to draw the 'Combining meta-analysis' MetaVolcano
cum_freq_data | A data formating function for inverse-cummulative DEG distribution
deg_def | A DEG definition function
diffexplist | Differential expression results from five studies
draw_cum_freq | A function to visualize the inverse-cummulative DEG distribution
draw_degbar | A function for DEG barplot visualization
draw_forest | A function to draw a forest plot from the REM MetaVolcano result
MetaVolcano-class | An S4 class to represent MetaVolcanoR results
plot_mv | A MetaVolcano ploting function
plot_rem | A function to plot the Random Effect Model (REM) MetaVolcano
remodel | A function to model foldchange variance along several studies This function calculate the REM-summary fold-change
rem_mv | A function to perform the Random Effect Model (REM) MetaVolcano
rename_col | A column renaming function merged inputs
set_degbar_data | A function setting data format for DEG barplot visualization
votecount_mv | A function to draw the 'Vote-counting meta-analysis' MetaVolcano