rma_wrapper {MMUPHin} | R Documentation

## Wrapper for fitting fixed/random effects meta-analysis model using metafor

### Description

Wrapper for fitting fixed/random effects meta-analysis model using metafor

### Usage

    rma_wrapper(maaslin_fits, method = "REML", output = tempdir(),
      forest_plot = NULL, rma_conv = 1e-06, rma_maxit = 1000,
      verbose = TRUE)

### Arguments

`maaslin_fits` | list of Maaslin2 result data frames, outputted from Maaslin2_wrapper.
`method` | meta-analysis model to run, options provided in metafor::rma.
`output` | directory for the output forest plots.
`forest_plot` | logical. should forest plots be generated for the significant associations.
`rma_conv` | rma threshold control.
`rma_maxit` | rma maximum iteration control.
`verbose` | should verbose information be printed.

### Value

a data frame recording per-feature meta-analysis association results. (coefficients, p-values, etc.)

[Package MMUPHin version 1.1.0 Index]