MapRatesView {MAGeCKFlute} | R Documentation

## View mapping ratio

### Description

View mapping ratio of each sample

### Usage

    MapRatesView(
      countSummary,
      Label = "Label",
      Reads = "Reads",
      Mapped = "Mapped",
      filename = NULL,
      width = 5,
      height = 4,
      ...
    )

### Arguments

`countSummary` | A data frame, which contains columns of 'Label', 'Reads', and 'Mapped'
`Label` | A character, indicating column (in countSummary) of sample names.
`Reads` | A character, indicating column (in countSummary) of total reads.
`Mapped` | A character, indicating column (in countSummary) of mapped reads.
`filename` | Figure file name to create on disk. Default filename="NULL", which means don't save the figure on disk.
`width` | As in ggsave.
`height` | As in ggsave.
`...` | Other available parameters in ggsave.

### Value

An object created by `ggplot`, which can be assigned and further customized.

### Author(s)

Wubing Zhang

### Examples

    file4 = file.path(system.file("extdata", package = "MAGeCKFlute"),
    "testdata/countsummary.txt")
    countsummary = read.delim(file4, check.names = FALSE)
    MapRatesView(countsummary)

[Package MAGeCKFlute version 1.7.2 Index]