HiCcompare-package {HiCcompare} | R Documentation

## HiCcompare

### Description

HiCcompare provides functions for joint normalization and difference detection in multiple Hi-C datasets. HiCcompare operates on processed Hi-C data in the form of chromosome-specific chromatin interaction matrices. It accepts three-column tab-separated text files storing chromatin interaction matrices in a sparse matrix format which are available from several sources. HiCcompare is designed to give the user the ability to perform a comparative analysis on the 3-Dimensional structure of the genomes of cells in different biological states.

### Details

To learn more about HiCcompare, start with the vignettes: 'browseVignettes(package = "HiCcompare")'

### Author(s)

Maintainer: John Stansfield stansfieldjc@vcu.edu

Authors:

- Kellen Cresswell cresswellkg@vcu.edu

- Mikhail Dozmorov mikhail.dozmorov@vcuhealth.org

[Package HiCcompare version 1.9.0 Index]