HMEC.chr22 {HiCcompare} | R Documentation

## Hi-C data from HMEC cell line - chromosome 22 at 500kb resolution

### Description

A sparse upper triangular matrix containing the interacting regions and the corresponding Interaction Frequency (IF).

### Usage

    HMEC.chr22

### Format

A matrix with 2490 rows and 3 columns:

region1

  The first interacting region - corresponds to the row name of a full Hi-C contact matrix

region2

  The second interacting region - corresponds to the column name of a full Hi-C contact matrix

IF

  The Interaction Frequency - number of read counts found for the interaction between region1 and region2

### Value

A matrix

### Source

Data from the Aiden Lab. See their website at http://www.aidenlab.org/ Or the the GEO link to download the data https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525

[Package HiCcompare version 1.9.0 Index]