0f13879758690de13e08cdbbb64322d7 *CITATION
4ed43dc93336f1d0fec2dd75a0f4108d *DESCRIPTION
757d3fc601278b9f0538f35b5eb1c5cc *INDEX
743d964164618e5aa205ac3d5dfaf63c *Meta/Rd.rds
82fbc0f69f2afeff3dc953ef83bac3d0 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
c4a5bac95d4501dd31826cc45157acc8 *Meta/hsearch.rds
18a59d7b930a4b10400323bd92c846a1 *Meta/links.rds
bcab204a0631cdbc3a5ffe4046aad349 *Meta/nsInfo.rds
2cb822ae79f70bdf4bd09af3705e22ed *Meta/package.rds
fd6824021b96ffc03a421e750bf2a10c *Meta/vignette.rds
72ee1921276696de34d6c12e559f07d4 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/FourCSeq
ff0a202367b426a26f6c0c7959b886a2 *R/FourCSeq.rdb
08e9ada4e2ecbb36fb0c1839a0eb9b2a *R/FourCSeq.rdx
e712884310e3ae0225ae27d9b4125f3d *data/datalist
0789fe12ab99c865a0bbfad6109dd70a *data/fc.rda
16ca8c7048b6cc6872ef0b622068a9bc *data/fcf.rda
2417ac37a22bc1cc547d5b39566dd8ba *doc/FourCSeq.R
d88c442490157761fcb294bb0f108775 *doc/FourCSeq.Rnw
8a276b36b6aaf4df0d983b8605a283af *doc/FourCSeq.pdf
988ed573102103c3c8a6351953ffddaa *doc/index.html
a47189afb85d952ce3f8c9029c5426ae *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam
e66069ad85339fc6d53c82fd15331b9e *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam.bai
71abbf35f0027ba4136a183be67105b3 *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam
b9ae7b5dd37a082cde997aeeecd30b8a *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam.bai
9995280b16d4dd17a2f6d469969d70bb *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam
0cc7e25225dcdea740c8eb34c00cdaee *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam.bai
fbe26ce19c28dabbf2e4091a1badd2d4 *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam
0d76977b2e36046cc176112776c5fa4e *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam.bai
d7271804926af64db2e5967c5dcd973b *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam
89cda3597b0911a9021eb51a8d5a5620 *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam.bai
26631755da6e4834f94337426858e559 *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam
36692e73c13be4c94e3c355b9a1a697b *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam.bai
255a24367518eb0f66ac409b42de54f3 *extdata/dm3_chr2L_1-6900.fa
22c667eddcaa6a93ba036d92d619b3d9 *extdata/primer.fa
52cdc74e647c9f0cd992a5b5c8e56263 *extdata/python/demultiplex.py
d3bca03dda0cf76445b40efb8a81d07f *help/AnIndex
59a42148142a1d7f5aa16d0c480ba658 *help/FourCSeq.rdb
441a0ab1d797b713350fce0b175f3e63 *help/FourCSeq.rdx
e71b9de88e03d06c0bdbfa31c86e4629 *help/aliases.rds
34436d064371ea0995828cd7f579aae3 *help/paths.rds
ad8350751f397d158435bbb262b85f8c *html/00Index.html
800197462a8327f0d8268b8e14aaf3de *html/FourC.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
201d9ecd99793190eda7e062992e5366 *html/addFragments.html
a1c45b32cdd5710e7ae513e445cd36ad *html/addPeaks.html
dcca371df6185df9067f389739c60004 *html/addViewpointFrags.html
2f5bb7b05994f2739921d66447d6cb6e *html/combineFragEnds.html
24aca154df826dde0009de29fb40967f *html/countFragmentOverlaps.html
581dc97028697b514cc255438be6547a *html/countFragmentOverlapsSecondCutter.html
3d4b7bdb73f3381e22f85c19617671a1 *html/distFitMonotone.html
e899d9b0ee05f298a1296b803ded5eba *html/distFitMonotoneSymmetric.html
fd0fcca21a6b30f205ebd0bf3ede12ee *html/fc.html
7e8df2725f5445e95e83435220e1a19a *html/fcf.html
ce114b259ffaf1923d02a8b30aa66b4a *html/findViewpointFragments.html
7710c22c8f0db413716b1fbc7de63f95 *html/getAllResults.html
d8b3544c85ce6e1be239d1cb04ca20b5 *html/getDifferences.html
8804af043bacbd5946c1e0d17ab1745a *html/getDistAroundVp.html
0166a2b3f09238488946229501a99e5b *html/getNormalizationFactors.html
0ec9a070e9183fd703c5704f59a7b5cc *html/getReferenceSeq.html
9b34638926ef3a5710c2dc9b51812c50 *html/getZScores.html
7b1e77699017aef939cbc63895fd60ea *html/normalizeRPM.html
af7e162c1d702fb2103b7a5cbda9c914 *html/plotDifferences.html
e01f62637e85d5a9af4f69a035953d3c *html/plotFits.html
9fc7c4b684cda71c562da5f94d418bd3 *html/plotNormalizationFactors.html
1ea383e67b3b9d2c64ea267dc9dcc954 *html/plotScatter.html
215a0268ab90f12873c0ac87c06d7cd5 *html/plotZScores.html
12a150bec8836d091e5075ec8889dd3a *html/smoothCounts.html
d837c2415dd877b72125080cbe547b25 *html/smoothHitPerCent.html
22c19140ae0a40334332c676de13652d *html/writeTrackFiles.html
