MetaclusterMFIs {FlowSOM} | R Documentation

## MetaclusterMFIs

### Description

Compute the median fluorescence intensities for the metaclusters

### Usage

    MetaclusterMFIs(fsom)

### Arguments

`fsom` | Result of calling the FlowSOM function

### Value

Metacluster MFIs

### Examples

    fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
    ff <- flowCore::read.FCS(fileName)
    ff <- flowCore::compensate(ff,ff@description$SPILL)
    ff <- flowCore::transform(ff,
             flowCore::transformList(colnames(ff@description$SPILL),
                                    flowCore::logicleTransform()))
    flowSOM.res <- FlowSOM(ff,scale=TRUE,colsToUse=c(9,12,14:18),maxMeta=10)
    mfis <- MetaclusterMFIs(flowSOM.res)

[Package FlowSOM version 1.19.4 Index]