FGNet_GUI {FGNet} | R Documentation

## FGNet graphical user interface

### Description

Provides a graphical user interface (GUI) to most FGNet functionalities.

### Usage

    FGNet_GUI(geneList = NULL)

### Arguments

`geneList` | vector. If provided, assigns the value to the genes field. It can be a character vector containing the gene list, or a named numeric vector with the gene expression.

### Details

To generate the functional network, first execute or import the Functional Analisis of the gene list with one of the tools in Tab "1 - FEA", then generate the network or the report in Tab "2 - Network".

### Value

Opens the GUI. No value is returned. The results of the analyses will be saved in the current working directory.

### Note

Available for Windows and Linux. The current version of the GUI is not available for Mac OS X Snow Leopard.

### See Also

Overview of the package: `FGNet`

Package tutorial: `vignette("FGNet-vignette")`

### Examples

    ## Not run:

    FGNet_GUI()

    # To directly input a gene list (i.e. from a previous analysis):
    geneList <- c("YBL084C", "YDL008W", "YDR118W", "YDR301W", "YDR448W", "YFR036W",
        "YGL240W", "YHR166C", "YKL022C", "YLR102C", "YLR115W", "YLR127C", "YNL172W",
        "YOL149W", "YOR249C")
    # Optional gene expression
    geneExpr <- setNames(c(rep(1,10),rep(-1,5)), geneList)

    FGNet_GUI(geneExpr)

    ## End(Not run)

[Package FGNet version 3.21.1 Index]