readGeneTermSets {FGNet} | R Documentation

## Read gene-term sets

### Description

Reads a file containing gene-term sets (formatted output from FEA) and transform it into clusters/metagroups and geneTermSets tables to imput to FGNet.

### Usage

    readGeneTermSets(fileName, tool = NULL, simplifyGage = TRUE)

### Arguments

`fileName` | character. File name of the .txt file.
`tool` | character. Tool used for the FEA (row name from `data(FEA_tools); FEA_tools`)
`simplifyGage` | logical. Only for GAGE: Wether to simplify the results and keep only the essential terms in the clustes.

### Value

List formated in the same way as the fea functions.

### See Also

Overview of the package: `FGNet`

Package tutorial: `vignette("FGNet-vignette")`

[Package FGNet version 3.21.1 Index]