probeEPICfemanno {FEM} | R Documentation

## Processed annotation of Illumina EPIC probes for use in the FEM algorithm.

### Description

A list of entries giving various annotation information of the EPIC probes

### Usage

    data(probeEPICfemanno)

### Value

`typeC` | a vector of 0's and 1's indicating whether a probe maps to a CpG (1) or not (0).
`CGI` | a vector of 0's and 1's indicating whether a probe maps to a CGI (1) or not (0).
`Design` | a vector of 1's and 2's, specifying Design type of probe (1 = type I, 2 = type II).
`probeID` | the EPIC probe IDs.
`GeneGroup` | an integer vector specifying which gene region the probe maps to. Regions are annotated as follows: 1=TSS1500, 2=TSS200, 3=5'UTR, 4=1stExon, 5=gene body, 6=3'UTR. Probes with ambiguous mappings are assigned an NA.
`eid` | mapping of EPIC probes to Entrez Gene ID.

### Author(s)

"Yinming Jiao"<20907099@zju.edu.cn>, "Andrew E Teschendorff"<andrew@picb.ac.cn>

### References

A systems-level integrative framework for genome-wide DNA methylation and gene expression data identifies differential gene expression modules under epigenetic control. Jiao Y, Widschwendter M, Teschendorff AE. Bioinformatics. 2014;30(16):2360-2366

[Package FEM version 3.15.0 Index]