EventPointer_RNASeq {EventPointer} | R Documentation

## Statistical analysis of alternative splcing events for RNASeq data

### Description

Statistical analysis of all the alternative splicing events found in the given bam files.

### Usage

    EventPointer_RNASeq(Events, Design, Contrast, Statistic = "LogFC",
      PSI = FALSE)

### Arguments

`Events` | Output from EventDetection function
`Design` | The design matrix for the experiment.
`Contrast` | The contrast matrix for the experiment.
`Statistic` | Statistical test to identify differential splicing events, must be one of : LogFC, Dif_LogFC and DRS.
`PSI` | Boolean variable to indicate if PSI should be calculated for every splicing event.

### Value

Data.frame ordered by the splicing p.value . The object contains the different information for each splicing event such as Gene name, event type, genomic position, p.value, z.value and delta PSI.

### Examples

       data(AllEvents_RNASeq)
       Dmatrix<-matrix(c(1,1,1,1,1,1,1,1,0,0,0,0,1,1,1,1),ncol=2,byrow=FALSE)
       Cmatrix<-t(t(c(0,1)))
       Events <- EventPointer_RNASeq(AllEvents_RNASeq,Dmatrix,Cmatrix,Statistic='LogFC',PSI=TRUE)

[Package EventPointer version 2.5.5 Index]