# Utilities for Handling Single-Cell Droplet Data

## Documentation for package ‘DropletUtils’ version 1.7.14

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

barcodeRanks | Calculate barcode ranks
chimericDrops | Remove chimeric molecules
defaultDrops | Call cells from number of UMIs
downsampleBatches | Downsample batches to equal coverage
downsampleMatrix | Downsample a count matrix
downsampleReads | Downsample reads in a 10X Genomics dataset
emptyDrops | Identify empty droplets
encodeSequences | Encode nucleotide sequences
estimateAmbience | Estimate the ambient profile
get10xMolInfoStats | Get 10x cell statistics
hashedDrops | Demultiplex cell hashing data
makeCountMatrix | Make a count matrix
maximumAmbience | Maximum ambient contribution
read10xCounts | Load data from a 10X Genomics experiment
read10xMolInfo | Read the 10X molecule information file
removeChimericDrops | Remove chimeric molecules
removeSwappedDrops | Clean barcode-swapped droplet data
swappedDrops | Clean barcode-swapped droplet data
testEmptyDrops | Identify empty droplets
write10xCounts | Write count data in the 10x format