Package: DiffBind
Type: Package
Version: 2.15.2
Title: Differential Binding Analysis of ChIP-Seq Peak Data
Author: Rory Stark<rory.stark@cruk.cam.ac.uk>, Gord Brown
        <gdbzork@gmail.com>
Maintainer: Rory Stark<rory.stark@cruk.cam.ac.uk>
Description: Compute differentially bound sites from multiple ChIP-seq
        experiments using affinity (quantitative) data. Also enables
        occupancy (overlap) analysis and plotting functions.
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 3.5), GenomicRanges, SummarizedExperiment
Imports: RColorBrewer, amap, edgeR, gplots, grDevices, limma,
        GenomicAlignments, locfit, stats, utils, IRanges, lattice,
        systemPipeR, tools, Rcpp, dplyr, ggplot2, BiocParallel,
        parallel, S4Vectors, Rsamtools (>= 1.99.1), DESeq2, methods,
        graphics, ggrepel
Suggests: DESeq, BiocStyle, testthat
Enhances: rgl, XLConnect
LinkingTo: Rhtslib (>= 1.15.3), Rcpp
SystemRequirements: GNU make
Collate: core.R parallel.R counts.R contrast.R analyze.R io.R helper.R
        utils.R RcppExports.R cpp_wrapper.R DBA.R
biocViews: Sequencing, ChIPSeq, DifferentialPeakCalling
git_url: https://git.bioconductor.org/packages/DiffBind
git_branch: master
git_last_commit: bc743bf
git_last_commit_date: 2020-03-18
Date/Publication: 2020-03-18
NeedsCompilation: yes
Packaged: 2020-03-19 03:03:31 UTC; biocbuild
Built: R 4.0.0; i386-w64-mingw32; 2020-03-19 15:04:16 UTC; windows
Archs: i386, x64
