oswFiles_DIAlignR {DIAlignR} | R Documentation

## Analytes information from osw files

### Description

analytes info from three SWATH runs:

run0 : hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt.chrom.mzML
run1 : hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
run2 : hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML

### Usage

    oswFiles_DIAlignR

### Format

A list of three elements where each element consists of a dataframe:

transition_group_id

  ID of each peptide

filename

  Name of corresponding mzML file

RT

  Retention time, in sec

delta_rt

  Retention time difference to library, in sec

assay_RT

  Library retention time, in sec

Intensity

  Inensity of associated feature

leftWidth

  Left width of the peak, in sec

rightWidth

  Right width of the peak, in sec

peak_group_rank

  Ranking of associated feature

m_score

  qvalue of associated feature

chromatogramIndex

  Indices of XICs of the feature in corresponding mzML

transition_ids

  Transition IDs (chromatogram IDs) of the feature

### Source

Raw files are downloaded from Peptide Atlas. File test_GenerateData.R has source code to generate the example data.

[Package DIAlignR version 0.99.12 Index]