subpathwayToGraph {DEsubs} | R Documentation

## Subpathway To Graph

### Description

Subpathway plotting as a graph.

### Usage

    subpathwayToGraph( DEsubs.out, submethod, subname, colors, size, export,
                        width, height, outfile, verbose )

### Arguments

`DEsubs.out` | Return value from `DEsubs`
`submethod` | Subpathway extraction type selection (get all availiable options from subpathwayTypes)
`subname` | Subpathway name as contained in `DEsubs` return value, i.e. 'sub1'.
`colors` | A custom color mode which overrides the default settings.
`size` | A vector storing width and height of the barplot visualization.
`export` | A set of options for exporting subpathway data. Possible options are 'plot', 'pdf', 'edgelist', 'json', 'gml', 'ncol', 'lgl', 'graphml','dot'.
`width` | The width of the printable area (pdf)
`height` | The height of the printable area (pdf)
`outfile` | Output file name of the visualization. If multiple export types have been selected, the outfile should have an extension '.*'
`verbose` | TRUE to display informative messages, FALSE to hide.

### Value

No value is returned.

### Examples

    load(system.file('extdata', 'data.RData', package='DEsubs'))

    outfile <- tempfile(fileext='.pdf')

    res <- subpathwayToGraph(
                    DEsubs.out=DEsubs.out,
                    submethod='community.walktrap',
                    subname=paste0('sub', 6),
                    size=c(10,10),
                    export='pdf',
                    outfile=outfile )

[Package DEsubs version 1.13.1 Index]