conditions {DESeq} | R Documentation

## Accessor functions for the 'conditions' information in a CountDataSet object.

### Description

The conditions vector is a factor that assigns to each column of the count data a condition (or treatment, or phenotype, or the like). This information is stored in the CountDataSet's "phenoData" slot as a row named "condition".

### Usage

    ## S4 method for signature 'CountDataSet'
    conditions(object, ...)
    ## S4 replacement method for signature 'CountDataSet'
    conditions(object) <- value

### Arguments

`object` | a CountDataSet
`value` | a vector of suitable length, i.e. with as many elements as `object` has samples.
`...` | should not be used for this method.

### Author(s)

Simon Anders, sanders@fs.tum.de

### Examples

       cds <- makeExampleCountDataSet()
       conditions( cds )

[Package DESeq version 1.39.0 Index]