theme_DEP1 {DEP} | R Documentation

## DEP ggplot theme 1

### Description

`theme_DEP1` is the default ggplot theme used for plotting in `DEP` with horizontal x-axis labels.

### Usage

    theme_DEP1()

### Value

ggplot theme

### Examples

    data <- UbiLength
    data <- data[data$Reverse != '+' & data$Potential.contaminant != '+',]
    data_unique <- make_unique(data, 'Gene.names', 'Protein.IDs', delim = ';')

    columns <- grep('LFQ.', colnames(data_unique))
    exp_design <- UbiLength_ExpDesign
    se <- make_se(data_unique, columns, exp_design)

    filt <- filter_missval(se, thr = 0)
    plot_frequency(filt) # uses theme_DEP1() style

[Package DEP version 1.9.0 Index]