PHA4 {DBChIP} | R Documentation

## ChIP-seq data of transcription factor PHA-4/FOXA in C.elegans

### Description

This data set contains parts of ChIP-seq data of transcription factor PHA-4/FOXA in C.elegans. ChIP and control data and identified binding sites in chromosome I with position < 0.9M bp are included.

### Usage

    data("PHA4")

### Format

PHA4 has three elements:

- `binding.site.list` a list of binding sites for embryonic and L1 conditions

- `chip.data.list` a list of ChIP reads data for embryonic and L1 conditions

- `input.data.list` a list of control reads data for embryonic and L1 conditions

- `conds` a vector of conditions of ChIP libraries.

### References

Zhong et al. (2010), Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response, PLoS Genetics, 6, e1000848.

### See Also

`DBChIP`

[Package DBChIP version 1.31.0 Index]