f428ce3ae577a5b3ab528d2224789732 *DESCRIPTION
b769348ad752d396bb2975e97e74c6ca *INDEX
0a1899da2d6de348416c62daad9948f7 *LICENSE
09735fa2aee2798a848f768818e814e7 *Meta/Rd.rds
f3e5fc69d48c0d36d8e5c184ef352ae7 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
c7fdd4fc63b1440a59da1b929f5e7625 *Meta/hsearch.rds
314eccc0e433ca9ad31fc579cc7a07bf *Meta/links.rds
c5c347d102666f7dcebbd1edd9008867 *Meta/nsInfo.rds
b148bc1b694beb652781e6ee7c6f6dec *Meta/package.rds
ca4e080b922d2a3d115af2669bfb745f *Meta/vignette.rds
822fbdf367543882daaed04960c7cf24 *NAMESPACE
96a00c72eee7b308a9feee87f6c26d31 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/DAMEfinder
4c4573119f72240d73b33aec93a81124 *R/DAMEfinder.rdb
3cecb0e7e66e50bbefe68d7778d655a6 *R/DAMEfinder.rdx
c9d2930d4d9c301a5bf786ecae2eded9 *data/extractbams_output.rda
14191c1edb7ae295a9c9838589416b45 *data/readtuples_output.rda
9333d55f6092e6ced4d4b800dc160cf8 *doc/DAMEfinder_workflow.R
652281d7a3d62b65db03220335c57503 *doc/DAMEfinder_workflow.Rmd
97537d3e63eea24c8e86a4898e878dd3 *doc/DAMEfinder_workflow.html
680dc99d32f897e1eb8d7cb9026a9120 *doc/index.html
daf558746caa459d128b1edcfd93915e *extdata/CRC1.chr19.trim.vcf
a3fa6a42464200025a673ef030513998 *extdata/CRC1_chr19.qs.CG.2.tsv.gz
0f29a7e50e6e2979be3a9a51014d1197 *extdata/CRC1_chr19_trim.bam
1a7c9830c7d6b8b09906b1dc7121b473 *extdata/CRC1_chr19_trim.bam.bai
9222a67cd3a6b0cfc18efd1355fcbc51 *extdata/NORM1.chr19.trim.vcf
cbc710962aa110134e2d5afcf3ca86b2 *extdata/NORM1_chr19.qs.CG.2.tsv.gz
8530eed239d8855e2491aa8c4283dccb *extdata/NORM1_chr19_trim.bam
0289955249e6ca9dfc11d3857e8aca94 *extdata/NORM1_chr19_trim.bam.bai
9cc429baf829fcceb7d0bf6d954f72dc *figures/DAME_only30reads.png
819d71dc2155c348f38b8a8c04cd59f7 *figures/DAME_snp_allsamps.png
77cb5e71d84ca11e26254618cb61321e *figures/DAME_snp_allsamps_median.png
8b5f4d1f6c5300c3318e75cd6e4c7742 *figures/DAME_snp_sampledreads.png
69b1d037d321c943b119a2019dc1c58b *figures/DAME_tuple_allsamps.png
5ca20291a9dc0fabd5e7dd7377cf5d14 *figures/DAME_tuple_allsamps_median.png
a9107c0f715cc46a7c8356fa1a6e1014 *figures/DAMEfinder_workflow.png
cffe6fdf85143d33894cf85dd951b0da *figures/damefindersticker.png
9676c9c0ad674f0a2470ca1d4ae560d6 *help/AnIndex
1b21e16a417e586e1970094007aaf49f *help/DAMEfinder.rdb
129f7c677f4bbe7c7531c82a191a4a80 *help/DAMEfinder.rdx
5fd0498f105d576a3a420a95d406b118 *help/aliases.rds
41d4afb8583c5a4666c6576a40af82a3 *help/paths.rds
31a20de259f0d4bd755c5a43ce9e325e *html/00Index.html
d1ceefbe57ae1a2448b447694579a322 *html/DAMEfinder.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f6551f6ae6d1aaa3a052b9400644aa13 *html/calc_asm.html
bcecfcc86a111f32c6d98516221be8de *html/calc_derivedasm.html
9e9457ebf0afb85f99724e6af9d70827 *html/calc_logodds.html
d63d5c02c3657da8bc41e29c2fa9228c *html/calc_score.html
a4959642abd30dfb2f195a9fdbdd0bc4 *html/calc_weight.html
cfd1189f06749e06817454275c547273 *html/dame_track.html
1f2fda5281d6ddd62e8466cacc2485ec *html/dame_track_mean.html
081f4028f314d29f26e5924536f8fed1 *html/empirical_pval.html
50733c740031516bd9c6f6209521e635 *html/extract_bams.html
d105cebad243d5ed04d49e64bf861506 *html/extractbams_output.html
9978a06e6a35b0bc17f49475659a5dd1 *html/find_dames.html
d1e5edb600112b1a96ba64601b2570f1 *html/getMD.html
e5b80d610af2a536082737486cdb6832 *html/get_tstats.html
3c40eebc06a0ae9fb03c1eb035cffa7a *html/methyl_MDS_plot.html
1bed52a997b385b995bf4d6af1676589 *html/methyl_circle_plot.html
730bd33362f77c694b0334ffaedf45a2 *html/methyl_circle_plotCpG.html
b939568b829c00b990608f4a8e8ee5ef *html/modulus_sqrt.html
a0b48fa1194482a16ac49fe230c65999 *html/read_tuples.html
ff0743dfc8191424549519d2ac71926c *html/readtuples_output.html
73033c29bfc9cc74c9e770a4eba85f92 *html/simes_pval.html
f9386ff4d3f534c98ee6c75470f5213e *html/splitReads.html
52f98e1f1b0a186bd57f463553e8f624 *scripts/extractbams_output.R
d29bf6b8be58a52fb355591eb4d6e11a *scripts/file_description.txt
0e79c5fc275fb6ab2c7f30b38347c4b6 *scripts/readtuples_output.R
