4ad19164b71f48a159aee0245eee9ad2 *CITATION
601451356cd3add2bb3e6146f83699d1 *DESCRIPTION
bdebbe6a515e01b9152333436324d824 *INDEX
5ebcb22c8d3163bc2e7db7d7482df9b9 *Meta/Rd.rds
9e4c22a9840cbfaf81d83152b801aebf *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
7b7d411f210e21248d24353afb386745 *Meta/hsearch.rds
d75faf0c4ecd0a249a48797d8f06bf86 *Meta/links.rds
b812c5fa5dabede73bbb0df2e71a3c94 *Meta/nsInfo.rds
66619f026adc35e95d09b2f14add6f66 *Meta/package.rds
ae23236c5aa5544652120eae9b4079c7 *Meta/vignette.rds
86c0b651bfa817b420bdda5df31a7ac4 *NAMESPACE
590504cacc0084a282f24e3746aedeb4 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/CrispRVariants
14965960945096caf91ccbcb4d43e3eb *R/CrispRVariants.rdb
bab695836d035d5cff699bf34f45d74e *R/CrispRVariants.rdx
5bcefbd75f6b359249e7e9c2ebc210a3 *data/Rdata.rdb
c69ac2184fd196465f94d97bea0f5410 *data/Rdata.rds
c849bac08cde56179a6f5fcb8c6d8830 *data/Rdata.rdx
80f8c2fbcf76e450958d2c32265b34fc *doc/index.html
1dbcdff8aee5885b08d9f481eb4b9f68 *doc/user_guide.R
030ad422de6cac5ecb1ef5c3ceaf6fc0 *doc/user_guide.Rmd
2177a94475ba99b3023bf3bc11e79052 *doc/user_guide.pdf
65dcdf1d72c2cb6532b582faf9648242 *extdata/Danio_rerio.Zv9.73.gol.sqlite
3d09e19e1a84f4163a94c7ac41b4d7a1 *extdata/GRCz10_81_ptena_txdb.sqlite
cb32a40b50b777c9872e74844182b9cc *extdata/IM2033.ab1
31f41ba5b5f3ffe65a72638ac48d59ee *extdata/ab1/ptena/phenotype/embryo1/AB2001.ab1
87fbf13a52e1801266cb385c7919a4e9 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam
a5faefe3c25efbb5817f4235b9b7ce57 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam.bai
aa172362f53fb84dfc85ff43e8b58232 *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam
64f942fe93f6cb37549443b020be66bd *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam.bai
dbfe81d150812e6f46063d6e3af8a7e9 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam
eee2ae352b4a9fedb9ceff871687b1a8 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam.bai
236be679c9bc2a2f812ff382455e885c *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam
eada6440c415bffc39581741c9d0a790 *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam.bai
4a3d7a75593c3a87d833e05158e4f380 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam
c3644513e0f3ccf53022a838cac19fb1 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam.bai
a049fec3b3743cdbcab988593e07fe95 *extdata/bed/guide.bed
2d865f43e37fb89160b910b38bf2d5d6 *extdata/cntnap2b_test_data.fastq.gz
cf0e50eedb184b713c6f3d8a5d134b95 *extdata/cntnap2b_test_data_guide.bed
de83e1ebb8d157390a22a65d54f41f23 *extdata/cntnap2b_test_data_s.bam
f02d12f0ea6761b0eccc19df7a7a1b6c *extdata/gol_F1_clutch_1_embryo_1_s.bam
25956b49d20dd443e4ce9ca7e943796e *extdata/gol_F1_clutch_1_embryo_1_s.bam.bai
15010247fef191cf1d68d54cd20677da *extdata/gol_F1_clutch_1_embryo_2_s.bam
d0cdaeb0fda0197a6d62454d1c39b2ca *extdata/gol_F1_clutch_1_embryo_2_s.bam.bai
853c55081cbbc183fc46976430fa650e *extdata/gol_F1_clutch_1_embryo_3_s.bam
cc78c8e5d1d87f8571a6b71e1bd555ee *extdata/gol_F1_clutch_1_embryo_3_s.bam.bai
4cbc3ed5188a19125e6d50a27ff029e6 *extdata/gol_F1_clutch_1_embryo_4_s.bam
1ab0458554627ac4566378c536bc12a4 *extdata/gol_F1_clutch_1_embryo_4_s.bam.bai
9b27d523742d463169189d8c72060f7a *extdata/gol_F1_clutch_1_embryo_5_s.bam
6ef0cf85fe25ad4862a63f1aec0cf394 *extdata/gol_F1_clutch_1_embryo_5_s.bam.bai
411c8683cbd70b8d9cb9801ac5999b38 *extdata/gol_F1_clutch_1_embryo_6_s.bam
a1b074693d1b5052595a594e37b3ae96 *extdata/gol_F1_clutch_1_embryo_6_s.bam.bai
d677e388666d320a0dc80e187b4d30db *extdata/gol_F1_clutch_1_embryo_7_s.bam
f87f533910ac9896d9e4b797a885d18c *extdata/gol_F1_clutch_1_embryo_7_s.bam.bai
9e6c0eb2312197f90d0b2f352dda6b10 *extdata/gol_F1_clutch_1_embryo_8_s.bam
3a778946d9df16b7926f382258402dde *extdata/gol_F1_clutch_1_embryo_8_s.bam.bai
672eab0fa40051a31a81c9c174670eb8 *extdata/gol_F1_clutch_2_embryo_4_s.bam
1b157a9c4b418311efc6caabec3cfa38 *extdata/gol_F1_clutch_2_embryo_4_s.bam.bai
89b05c3e000a2e938ea38a1f90366ac2 *extdata/gol_F1_metadata.txt
01243899f4f39295d5efa23b382c3949 *extdata/gol_F1_metadata_small.txt
a8ef6a3063c96abb61e28f05667eb361 *extdata/metadata/metadata.xls
dcc5845212d1e1b64d1956793fb683f9 *extdata/ptena_GRCHz10_ref.rda
a569e6388cd16318dd2bad059cad710d *extdata/wtx_Sanger.png
af3584ce04196fafd561da7cd20608a7 *help/AnIndex
851930bd79a6bba3f1068eae0cb2ff81 *help/CrispRVariants.rdb
8f64d77e3a1db1ab4fa6023e4bd253e7 *help/CrispRVariants.rdx
09dbc848bdc07bee1560be669789bb0e *help/aliases.rds
dbc019297ef8119e5d23e11252f17967 *help/paths.rds
33c749f19eaed8fe1ee782fd95cfaba7 *html/00Index.html
c0958123d86b9f564de72eb5ab100c7f *html/CrisprRun-class.html
498115f2fced9f629c31aa4adcbc996d *html/CrisprSet-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
9c1688cee384a1f16091e60542027bfb *html/abifToFastq.html
f1c185a256b4115d2447199c6f1d2d79 *html/addClipped.html
9c300bd11e24a53f70d886a37bc17fd5 *html/addCodonFrame.html
bdf8777c334a139a87b5d302a1920465 *html/alleleLabelsHelpers.html
adc5b1aececcf3e466c370cfe115b247 *html/alleles.html
4b80d9522049edb27988e33dffe8680f *html/alns.html
07dc4ea3246adfece5e81a326dee5801 *html/annotateGenePlot.html
cb11c056545f4a0da0ea76a757e7e275 *html/arrangePlots.html
7296277dc8e00d334bde28a117afd180 *html/barplotAlleleFreqs.html
e606df4d99adf02ecb334d7838891640 *html/collapsePairs.html
eaf0fe89e849a7756be813a4d745666f *html/consensusSeqs.html
1302610399df32432feda6c2edd36e2b *html/dispatchDots.html
24fe5ce24fc874761ceb266d2fba7f9d *html/excludeFromBam.html
8735c1431a007a869b7743e85f8ec6f1 *html/explodeCigarOpCombs.html
21ccf1c16d638022ebe6a780f4196a48 *html/findChimeras.html
35b2b5d30cf56891ad16fc96d0725704 *html/findSNVs.html
a9aff40bb820917685e94f207ff1bc6a *html/getAxisCoords.html
fd4c043cfdaf22ba371b19556bbffa0b *html/getChimeras.html
85a977432e3bedd70c44a501adbc9dd3 *html/getInsertionsTable.html
94b8be4e5076a1acf8c0b13b990e2825 *html/gol_clutch1.html
01d8acfc3384b926a82292cca2b438fc *html/indelCounts.html
0aa197fbb0dc6b2e38139c8da4bb8d3a *html/indelLabels.html
2f731d9d1620eb8e62b69466bc299fc3 *html/intersperse.html
c6c34c926efd003cb9d28d5062bf0188 *html/makeAlignmentTilePlot.html
624744a712c38e32a43e9e63c8b8dc75 *html/mergeChimeras.html
6c4ebf0a5ece2ddd7ee1826ce9374830 *html/mergeCrisprSets.html
b0c4bd0f95bdc851ffc3ed9606f7d48d *html/mismatchLabels.html
8a9817d75c1b39d0a9faa4187de7e628 *html/mutationEfficiency.html
8624dcb6b9aedb25f2186b450ef4830b *html/narrowAlignments.html
e89193fdb5929fb8ad8d90fa8c52be80 *html/plotAlignments.html
6c31d75f2f78877e96c6b4b991bcb580 *html/plotChimeras.html
d57655644dba34493a3f076805ef5761 *html/plotFreqHeatmap.html
32291bbdd5debe1d2c4d4f16ba7b6bbb *html/plotVariants.html
52421c13edef3bf5f6eb63eeac99a4ef *html/rcAlns.html
32c3d58ec49dc03b1e45af6a71326304 *html/readTargetBam.html
475c7fe0686de11b217282d4eb101659 *html/readsByPCRPrimer.html
295e1b14046ba6bee70657894df85abc *html/readsToTarget.html
312825ad66cfb49c7376fd39d597d48b *html/refFromAlns.html
626b2549ab6fd7ef96f8c32932a1143f *html/reverseCigar.html
deae1d71ddb7a234c5587bfaf00cc66c *html/rmMultiPCRChimera.html
fcb77baa648a8dcb1c52553652ee2bae *html/selectAlnRegionsHelpers.html
38187f471a8933b50fc916c754460520 *html/selectOps.html
29d950d74b5e1b8b50d6b67463ffbef7 *html/seqsToAln.html
9e63b76b38ad1ad0aefe913d4dd8b953 *html/setDNATileColours.html
f48bda51a10ccc8b3a66a99bb1937a53 *html/setMismatchTileColours.html
514fc92855761c72d4ad43be8d3373f7 *html/transformAlnsToLong.html
dbc912f67db27980b6ddf545efa27da5 *html/variantCounts.html
a1170e0d35bea91adad8b5359e2071fc *html/writeFastq.html
