getLOHColumn {CopyNumberPlots} | R Documentation

## getLOHColumn

### Description

Identify the column in a data.frame or equivalent with LOH information

### Usage

    getLOHColumn(df, col = NULL, avoid.pattern = NULL, needed = TRUE, verbose = TRUE)

### Arguments

`df` | (data.frame or equivalent) The object were columns are searched. It must be either a data.frame or an object where names(df) works.
`col` | (number or character) The column to identify. If NULL an heuristic will be used to automatically identify the column. It can also a number or a character to define the exact column to return.(defaults to NULL)
`avoid.pattern` | (character) An optional pattern to avoid on the column name. The pattern may be any valid regular expression. (defaults to "")
`needed` | (logical) Whether the column is needed or not. If TRUE, an error will be raised if the column is not found. (defaults to TRUE)
`verbose` | Whether to show information messages. (defaults to TRUE)

### Details

Identify the column of a data.frame or equivalent that contains the LOH information and return its position

### Value

The number of the column matching the specification or NULL if no column was found.

### Examples

    df <- data.frame("id"= "rs1234","chromosome"="chr1", "Start"=0, "end.position"=100,
    "copy.number.level"=3, "LOH"=0, "median.value.per.segment"=1.2,
    "BAF"=0.2, "Log Ratio"=1.5, "strange.name"="strange.value")
    col.num <- getLOHColumn(df = df)
    col.num <- getLOHColumn(df = df, col = "LOH")

[Package CopyNumberPlots version 1.3.3 Index]