2ab94a6733195eae1c19304bbdab987b *CITATION
16b11f0ec2b6d4ec7078475a95200c03 *DESCRIPTION
c8f08dfae8335eb3a2ece78e918b6cc2 *INDEX
48a7b34c671c1d1be9e71dad527d8d79 *Meta/Rd.rds
87cc233fdaec1024288e62782040c85d *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
ea9e416e68f42208e17f5ff4d271ea61 *Meta/hsearch.rds
91832b81753855f2122305b2dc832c24 *Meta/links.rds
0b2ce75cc80c98fb24a83de34abbce55 *Meta/nsInfo.rds
bb6abfba226e4bdad35c5f94d3759b84 *Meta/package.rds
5a51a49b71285c4624e27f748936c01c *Meta/vignette.rds
2c6989a4160f54e587717dc36930757a *NAMESPACE
c761c13a554a0178161d3abcfc031fed *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Chicago
75b8a19f3502557682a0e6471a7e2376 *R/Chicago.rdb
1a8cb640e4018bdd105869314a5f60a7 *R/Chicago.rdx
be5c025eb1be7bfca21cf1dd10fac3fd *data/cdUnitTest.rda
8457791f37ca03b3893787812c10977c *doc/Chicago.R
91e03ffb9903f7c5da93bb38e80e90c5 *doc/Chicago.Rmd
4511039181a348c0528110c3165ae1ad *doc/Chicago.html
37492ceff9179c57c963aac08c8ae0fd *doc/index.html
bc7339c0acdef5dd9556e786cd4108c8 *extdata/unitTestChIP/featuresmESC.txt
9a3ab07f0a9d5bca66f6e69a301384e2 *extdata/unitTestChIP/unitTestCTCF_ENCFF001ZQY.broadPeak.bed
50a37b4afbc409ab065ff1be6c0846a9 *extdata/unitTestChIP/unitTestH3K27me3_ENCFF001ZJO.broadPeak.bed
3a0b059f32523b4c2c5c5c200a9a916d *extdata/unitTestChIP/unitTestwgEncodeLicrHistoneEse14H3k27acME0129olaStdPk.broadPeak
f8fe5c018ac5126ad05082f3cf235030 *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k04me3StdPk.narrowPeak
77875efe530d66bbe85c38beb8edd4de *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k09me3StdPk.narrowPeak
d33768e766f58986b79f1786e9727304 *extdata/unitTestData/unitTest_mESC_rep1.chinput
176bdad1ce209180fdb676818094ab67 *extdata/unitTestData/unitTest_mESC_rep2.chinput
6d658c9192a9d45438425dd25195491a *extdata/unitTestDesign/unitTest.baitmap
0093ffe703303e3a5d0b6e1a0ef6d660 *extdata/unitTestDesign/unitTest.nbpb
b4bb6de635bb1205e293c61efb750efc *extdata/unitTestDesign/unitTest.npb
60a904049b15186b76b54b9f7fcae9c4 *extdata/unitTestDesign/unitTest.poe
d27a4f83d5f8dda72f4d99ebd8aa5742 *extdata/unitTestDesign/unitTest.rmap
b70696ed8eea9b1051fa36f50518ad8b *extdata/weights/GM12878-2reps.settings
bdaefdfe9a1bc018a82fd584a1b2e182 *extdata/weights/humanMacrophage-7reps.settings
80d6c48f96a472892d2fe4d313a80930 *extdata/weights/mESC-2reps.settings
b0627d2a2129963ae7d2639ad3a67bd3 *help/AnIndex
a645dfba2857f8f1c28d61c52c0c17ae *help/Chicago.rdb
4a00d471ab8d301cd32ec9917bdd7f35 *help/Chicago.rdx
c8d950f8cc831e580111a674132f00c4 *help/aliases.rds
1993c536f27051a5d96815c7c0227857 *help/paths.rds
8f63f65ca3cac441c6a600ebd974f9a7 *html/00Index.html
bb2d7cca5953666c11e199b8f6f6f9d5 *html/Chicago-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
bb16f1ddd140bebbf0675d0b8015e647 *html/cdUnitTest.html
68935834bf9167fe5df68c1851e58660 *html/chicagoData.html
a1d3991705404607ed483bc357d2fd0d *html/chicagoPipeline.html
c4bed7757b828b880fd535bed13848d4 *html/copyCD.html
8e1c2cff3a3fc4f9d6733dfdc9fb5bf0 *html/defaultSettings.html
dbea6fd28597fe507d150d4b46159c9e *html/estimateBrownianComponent.html
0987fc743cd9d4f0263de4d826cbcf8d *html/estimateDistFun.html
d11385ca3e451934f8b28ec6d920f9e6 *html/estimateTechnicalNoise.html
5b41a0cdd4dd4c1e58fc1defcb0bfdae *html/exportResults.html
543943265eb45a1d801de279fef8991e *html/getPvals.html
d2159203f9af9ae55677e8c772bef2a8 *html/getScores.html
6225bb1b37671c3956b80e7cbd3b898c *html/getSkOnly.html
d9a502670837bac76bb5867347548d77 *html/mergeSamples.html
2db831e25eab61dca3780a3a37feeb51 *html/modifySettings.html
f8b9110d06feeea100369a0bb483c750 *html/normaliseBaits.html
a13700558c6f582a9813bb1e7d93389d *html/normaliseOtherEnds.html
b1db0b7071a2a93b9eb6458fc2f8153f *html/overlapFragWithFeatures.html
5bf4beb5177d7ca65e1945942827a334 *html/peakEnrichment4Features.html
d614e932365bfbd44bf67def44763c0f *html/plotBaits.html
7a95b035f3872c7a61a44dfbf0a56189 *html/plotDistFun.html
af63765ec2798e77bfdffd8b426b9c3f *html/readAndMerge.html
55b0603fd34e8643197ed19dfefc8889 *html/readSample.html
cb7948e0b9cf80572612034db63644ee *html/setExperiment.html
