whichstrand {ChIPanalyser} | R Documentation

## Accessor method for the `whichstrand` slot in a `parameterOptions` object

### Description

Accessor method for the `whichstrand` slot in a `parameterOptions` object

### Usage

    whichstrand(object)

### Arguments

`object` | `object` is a `parameterOptions` object

### Details

PWM Score may be computed on either the positive strand ("+"), the negative strand ("-") or on both strands ("+-").

### Value

Returns on which strand PWM Scores should be computed ( `whichstrand` in a `parameterOptions` object)

### Author(s)

Patrick C. N. Martin <pm16057@essex.ac.uk>

### References

Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.

### Examples

    # Loading data
    data(ChIPanalyserData)

    #Building data objects
    GPP <- parameterOptions( whichstrand="+-")
    #Setting New Value for whichstrand
    whichstrand(GPP)

[Package ChIPanalyser version 1.9.1 Index]