fragmentlength-methods {ChIPQC} | R Documentation

## Retrieve the estimated fragment length

### Description

Retrieve the estimated fragment length.

### Methods

`signature(object = "ChIPQCexperiment")`

  Retrieve a `vector` of estimated fragments sizes, one for each sample in the experiment.

`signature(object = "list")`

  Retrieve a `vector` of estimated fragments sizes, one for each sample in a list of ChIPQCsample objects.

`signature(object = "ChIPQCsample", width)`

  Retrieve the estimated fragment length for a sample. If `width` is missing, the readlength derived from the bam file is used as the read length.

### Author(s)

Thomas Carroll and Rory Stark

### See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

### Examples

    data(example_QCexperiment)
    fragmentlength(exampleExp)
    fragmentlength(QCsample(exampleExp,1))

[Package ChIPQC version 1.23.1 Index]