rip-methods {ChIPQC} | R Documentation

## Retrieve numbers of reads overlapping peaks

### Description

Retrieve the numbers of reads overlapping peaks.

### Methods

`signature(object = "ChIPQCexperiment")`

  Retrieve a `vector` of the numbers of reads overlapping peaks for each sample in an experiment.

`signature(object = "list")`

  Retrieve a `vector` of the numbers of reads overlapping peaks for each sample in a list of ChIPQCsample objects.

`signature(object = "ChIPQCsample")`

  Retrieve the number of reads overlapping peaks in a sample.

### Author(s)

Thomas Carroll and Rory Stark

### See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

### Examples

    data(example_QCexperiment)
    rip(exampleExp)
    rip(QCsample(exampleExp,1))

[Package ChIPQC version 1.23.1 Index]