CNOlistToy2 {CellNOptR} | R Documentation

## Toy data with 2 time points

### Description

This data object contains the data associated with the Toy Model example from the package vignette, already loaded and formatted as a CNOlist object, and modified to contain 2 time points. The second time point is such a way that all of the signals stay as in time 1, except for cJun and Jnk which go to zero.

### Usage

    CNOlistToy

### Format

CNOlistToy is a list with the fields "namesCues" (character vector), "namesStimuli" (character vector), "namesInhibitors" (character vector), "namesSignals" (character vector), "timeSignals" (numerical vector), "valueCues" (numerical matrix), "valueInhibitors" (numerical matrix), "valueStimuli"(numerical matrix), "valueSignals"(numerical matrix).

### Source

This data and model is extracted from the Matlab version of CellNOpt1.0 (http://www.ebi.ac.uk/saezrodriguez/software.html#CellNetOptimizer).

### References

J. Saez-Rodriguez, L. G. Alexopoulos, J. Epperlein, R. Samaga, D. A. Lauffenburger, S. Klamt and P. K. Sorger. Discrete logic modeling as a means to link protein signaling networks with functional analysis of mammalian signal transduction, Molecular Systems Biology, 5:331, 2009.

[Package CellNOptR version 1.33.0 Index]