compact.data.frame {CNVtools} | R Documentation

## Compacts the expanded data frame format needed by our fitting procedure into more compact and user friendly version

### Description

Small internal routine returning a more compact and user friendly version of the output of the fitting algorithm.

### Usage

    compact.data.frame(full.frame)

### Arguments

`full.frame` | An expanded data frame (one point per data point and per component in the fit, ie. 1,000 individuals fitted on three components would have 3,000 rows.

### Details

This function should be invisible to most users and is part of the EM fitting procedure.

### Value

A data frame in a compact version, with one row per data point and one column for each component: P1, P2, P3 in the three component case for the probabilities for the calls to be equal to 1,2 or 3.

### Author(s)

Vincent Plagnol vincent.plagnol@cimr.cam.ac.uk and Chris Barnes christopher.barnes@imperial.ac.uk

[Package CNVtools version 1.81.0 Index]