82c00b01afab8cc7247470e55d2775e7 *CITATION
013abbdc8a62cddc9e4c511c8944ad23 *DESCRIPTION
7cba324e068e87cb387ecfb23ef44ab7 *INDEX
11e320893e62822fcdb3d1f5169200f9 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
4e58aacb81c8553e0bd1c416cf475a2c *Meta/hsearch.rds
c13a271545754c4b3f541a4f69f74683 *Meta/links.rds
8a762743dc0a20422d035882dfb8f524 *Meta/nsInfo.rds
682e2146bb07d25d99f7782f8bf69019 *Meta/package.rds
7381f67e300049b2b7de94df5743e1b6 *Meta/vignette.rds
174ae36c773f12a801e86290319ac172 *NAMESPACE
580dd2d1b3f80a5af74c95989f105cbd *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CHRONOS
3d4110ae60a1e3349d2118961cf92a7b *R/CHRONOS.rdb
9c56b9caa6328681ad1b2cb69c4291ce *R/CHRONOS.rdx
5060cd035b4e479ec4b608a1cf513f95 *doc/CHRONOS.R
7cbdd0127ad5f77a0ee7c6ee3b48063a *doc/CHRONOS.Rmd
958867f75d1c4beede526b4e0ef6108d *doc/CHRONOS.pdf
f9260aa5f28bca1bcb77cbf2f18f4926 *doc/index.html
8d1c8068f1e84c53b28cbe095f4801f5 *extdata/Downloads/KEGG/hsa/hsa04915.xml
40ef2ba0fbdc3b2a3a78eddadb990099 *extdata/Downloads/KEGG/hsa/hsa04917.xml
bd05b84234ad3f33ae6ea7516c7f4f97 *extdata/Downloads/KEGG/hsa/hsa04930.xml
263f5c1323dd479aa9781f0455f831ca *extdata/Downloads/KEGG/hsa/hsa05031.xml
5c86930303076b56fffb2124659ee722 *extdata/Downloads/mirbase/miRNAmaps_cel.RData
a0cb7ea78b15e55988d9ac247456bcbe *extdata/Downloads/mirbase/miRNAmaps_cfa.RData
20656607818c5a6e0f0999336c998947 *extdata/Downloads/mirbase/miRNAmaps_dme.RData
6ac71ed83a95d7c3be06257ba71cfe4c *extdata/Downloads/mirbase/miRNAmaps_dre.RData
d801f193d9043e618fc4db0cd5a12bab *extdata/Downloads/mirbase/miRNAmaps_gga.RData
848308837e8a4b8c8c9dda5b2b3b0338 *extdata/Downloads/mirbase/miRNAmaps_hsa.RData
f26276ab1d447631f168ed71619f0300 *extdata/Downloads/mirbase/miRNAmaps_mmu.RData
d886c18f5539936ff080e8a078f91513 *extdata/Downloads/mirbase/miRNAmaps_oar.RData
61f80721ee625b915c5e278e32f1878d *extdata/Downloads/mirbase/miRNAmaps_rno.RData
ba0338a0619071b90c76159b19b7dda0 *extdata/Examples/data.RData
8d1c8068f1e84c53b28cbe095f4801f5 *extdata/Examples/kgml/hsa04915.xml
40ef2ba0fbdc3b2a3a78eddadb990099 *extdata/Examples/kgml/hsa04917.xml
bd05b84234ad3f33ae6ea7516c7f4f97 *extdata/Examples/kgml/hsa04930.xml
263f5c1323dd479aa9781f0455f831ca *extdata/Examples/kgml/hsa05031.xml
80be6b7034da70420088ae883e122025 *extdata/User/TarBase.xlsx
b73847dc20f74e19d50f266e54a900a9 *extdata/User/interestingGenes.txt
f5bd80c56bd4310f22a950f561b4db72 *extdata/User/mRNAexpressions.txt
6209f09eb733f87ac17256483bfcef3a *extdata/User/miRNAexpressions.txt
6da5e89fa7bb7b55bef94a3f3fbeb067 *extdata/User/miRecords.xlsx
67b9999ac058bfbe67206f9d90700dbe *help/AnIndex
4bfb64f706e30291bf1bbf292edf0b9f *help/CHRONOS.rdb
b5e9892bbe737f465abbefcd9efacc77 *help/CHRONOS.rdx
5a3e865d0900e0271d2e7ba2d0a567d3 *help/aliases.rds
ee43f80522df0b833e3aa1aabf0c2664 *help/paths.rds
643e24ef7f5b47d0a0260bfdfb3415d7 *html/00Index.html
1e0ec0915fd75c1c39ccec5730be405c *html/CHRONOSrun.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a7a9eeae46241559bb024174d45dc1f5 *html/convertMiRNANomenclature.html
31b726c990be8bb2306771607fa6464d *html/convertNomenclature.html
dec680d2416d9b8d77f1941a4a19e77e *html/createPathwayGraphs.html
7ff88e8489477a48bda47f827c908e68 *html/downloadKEGGPathwayList.html
97b66c56d6643ca2d642cca2b9ab1ac4 *html/downloadMiRecords.html
0e95904dbbe897ac8ab0d9a9ad470aeb *html/downloadPathways.html
5560872d0b07477d8d95001614edb96d *html/extractLinearSubpathways.html
73473385b81ad1ac9cf5158a3a3bec7c *html/extractNonLinearSubpathways.html
658fdefe5fc0d6f62bf3f944b820b11a *html/getEdgeTypes.html
8ff1c65be650eb1df3042e7c5380c189 *html/importExpressions.html
4664e41186eab8865d964547e4f81b62 *html/pathwayMeasures.html
205376577b9a362a031a0addbda2054e *html/scoreSubpathways.html
177a0795880a307bcd3345a0a1b6750d *html/subpathwayKEGGmap.html
375653133fb46e76ade67b110b0e3773 *html/subpathwayMiRNAs.html
a316af05716f51efa570539517233633 *html/visualizeResults.html
4618e85cf7e05a7a8a825e6203258c4d *java/CHRONOS.jar
f26364f968916f546b7b86cf122f27c3 *unitTests/test_CHRONOSrun.R
4f7aefd3040ac2c26db999d47096f53d *unitTests/test_pathwayToGraph.R
3d1e948699f5b4b9d0c25fa99afce3c6 *unitTests/test_subExtractionLinear.R
b5a2804bef03d6cca7315e983cd6852d *unitTests/test_subExtractionNonLinear.R
8c9ceaeb0876827e50e9468aadb3f67b *unitTests/test_subRefinement.R
3100a07ec828065bfc818a701ef293e3 *unitTests/test_subVisualization.R
