getTracks {BubbleTree} | R Documentation

## getTracks

### Description

get all tracks

### Usage

    getTracks(p1, p2, title = "")

### Arguments

`p1` | set 1
`p2` | set 2
`title` | the title

### Value

all of the requested tracks

### Examples

    load(system.file("data", "allCall.lst.RData", package="BubbleTree"))
    load(system.file("data", "centromere.dat.rda", package="BubbleTree"))
    load(system.file("data", "all.somatic.lst.RData", package="BubbleTree"))
    load(system.file("data", "hg19.seqinfo.rda", package="BubbleTree"))

    trackplotter <- new("TrackPlotter")
    gr2 = centromere.dat
    nn <- "sam2"
    ymax <- ifelse(nn %in% c("lung.wgs", "lung.wes"), 9, 4.3)
    p1 <- xyTrack(trackplotter,
                  result.dat=allCall.lst[[nn]]@result,
                  gr2=gr2,
                  ymax=ymax) + ggplot2::labs(title=nn)

    p2 <- bafTrack(trackplotter,
                   result.dat=allCall.lst[[nn]]@result,
                   gr2=gr2,
                   somatic.gr=all.somatic.lst[[nn]])

    t1 <- getTracks(p1, p2)

[Package BubbleTree version 2.17.0 Index]