heteroLociTrack {BubbleTree} | R Documentation

## heteroLociTrack

### Description

get the heteroLoci track

### Usage

    heteroLociTrack(.Object, result.dat, gr2, hetero.gr = NULL, min.prev = 0.15,
      ymax = 4.3, cex = 0.5)

    ## S4 method for signature 'TrackPlotter'
    heteroLociTrack(.Object, result.dat, gr2,
      hetero.gr = NULL, min.prev = 0.15, ymax = 4.3, cex = 0.5)

### Arguments

`.Object` | the object
`result.dat` | the results
`gr2` | the gr2 object
`hetero.gr` | hetero annotation
`min.prev` | previous min
`ymax` | max y
`cex` | the cex

### Value

the highlightted heterozygosity track

### Examples

    load(system.file("data", "allCall.lst.RData", package="BubbleTree"))
    load(system.file("data", "centromere.dat.rda", package="BubbleTree"))
    load(system.file("data", "allHetero.lst.RData", package="BubbleTree"))
    load(system.file("data", "hg19.seqinfo.rda", package="BubbleTree"))

    trackplotter <- new("TrackPlotter")
    gr2 = centromere.dat
    nn <- "sam2"
    z1 <- heteroLociTrack(trackplotter, allCall.lst[[nn]]@result,
                          gr2, allHetero.lst[[nn]])

[Package BubbleTree version 2.17.0 Index]