element_funs {BiocSet} | R Documentation

## Functions applied to elements in a `BiocSet` object

### Description

All of the major methods applied to a `BiocSet` object can be explicitly applied to the element tibble. These functions bypass the need to use the `es_activate` function by indicating what function should be used on the element tibble.

### Usage

    filter_element(.data, ...)

    select_element(.data, ...)

    mutate_element(.data, ...)

    summarise_element(.data, ...)

    arrange_element(.data, ...)

    left_join_element(.data, ...)

    tibble_from_element(.data, how = unlist)

    data.frame_from_element(.data, how = unlist)

### Arguments

`.data` | A `BiocSet` object.
`...` | Additional arguments passed to the function.
`how` | Multiple entries will become a list.

### Value

A `BiocSet` object.

For `tibble_from_element`, a tibble.

For `data.frame_from_element`, a data.frame.

### Examples

    es <- BiocSet(set1 = letters, set2 = LETTERS)
    filter_element(es, element == "a")

    es %>% select_element(element)

    es %>% mutate_element(pval = rnorm(1:52))

    es %>% summarise_element(n = n())

    es %>% arrange_element(desc(element))

    tbl <- tibble(x = 1:5, y = letters[1:5])
    es <- BiocSet(set1 = letters[c(1,3,5)], set2 = letters[c(2,4)])
    left_join_element(es, tbl, by = c(element = "y"))

    tibble_from_element(es)

    data.frame_from_element(es)

[Package BiocSet version 1.1.2 Index]