plot_Ic_Simulation {BioTIP} | R Documentation

## Line or boxplot of an observed and its simulated scores

### Description

Generate a line (or box) plot of Ic score and simulated Ic scores, with three horizontal lines: the min, max and 2*(max-min) value of the state of interests, or all values.

### Usage

    plot_Ic_Simulation(
      Ic,
      simulation,
      las = 0,
      ylim = NULL,
      order = NULL,
      main = NULL,
      ylab = "Ic",
      fun = c("matplot", "boxplot"),
      which2point = NULL
    )

### Arguments

`Ic` | A vector with names of states. If order is not assigned, then plot by the order of this vector.
`simulation` | A numeric matrix of Ic scores in which rows are states and columns are numbers of simulated times. It can be obtained from `simulation_Ic`
`las` | Numeric in 0, 1, 2, 3; the style of axis labels. Default is 0, meaning labels are parallel. (link to http://127.0.0.1:21580/library/graphics/html/par.html).
`ylim` | An integer vector of length 2. Default is NULL.
`order` | Characters of names of Ic to be plotted in a desired `order`. Default is NULL.
`main` | A character vector. The title of the plot. Default is NULL.
`ylab` | titles y axes, as in plot.
`fun` | A character choose between ('matplot', 'boxplot'), indicating plot type.

### Value

Return a plot of the observed Ic (red) and simulated Ic (grey) scores per states.

### Author(s)

Zhezhen Wang zhezhen@uchicago.edu; Xinan H Yang xyang2@uchicago.edu

### Examples

    sim = matrix(sample(1:10, 9), 3, 3)
    row.names(sim) = paste0('state', 1:3)
    Ic = c('state1' = 3.4, 'state2' = 5.6, 'state3' = 2)
    plot_Ic_Simulation(Ic, sim)

[Package BioTIP version 1.1.1 Index]