cirPlot4pathway {BioMM} | R Documentation

## Circular plot for a set of pathways

### Description

Plot the individual CpGs within a given set of pathways. The significance of the CpGs are illustrated by the negative log P value.

### Usage

    cirPlot4pathway(datalist, topPathID, core = MulticoreParam(),
      fileName = NULL)

### Arguments

`datalist` | The input data list containing ordered collections of matrices.
`topPathID` | A predefined pathway IDs.
`core` | The number of cores used for computation. (Default: 10)
`fileName` | The plot file name. (Default: 'cpgTopGOplot.png')

### Details

Top 10 or 20 pathways are usually suggested to be visualized.

### Value

An output image file.

### See Also

`omics2pathlist`.

[Package BioMM version 1.3.0 Index]