setAnnotationFromObject {BgeeCall} | R Documentation

## Set annotation_object of one UserMetadata object

### Description

Method of the class UserMetadata. Set annotation_object of one UserMetadata object by using one GRanges object as input.

### Usage

    setAnnotationFromObject(userObject, annotationObject, annotationName)

    ## S4 method for signature 'UserMetadata,GRanges,character'
    setAnnotationFromObject(userObject, annotationObject, annotationName = "")

### Arguments

`userObject` | The UserMetadata object
`annotationObject` | object of thr GRanges S4 class
`annotationName` | (optional) Name of the annotation. Will be used to create folders.

### Details

If no annotationName is provided the name of the file is used to create folders.

### Value

An object of the class UserMetadata

### Examples

    {
    user <- new("UserMetadata")
    annotation_object <- rtracklayer::import(system.file("extdata",
    "annotation.gtf", package = "BgeeCall"))
    user <- setAnnotationFromObject(user, annotation_object,
                                     "annotation_name")
    }

[Package BgeeCall version 1.3.1 Index]