merge_transcriptome_and_intergenic {BgeeCall} | R Documentation

## Merge transcriptome file provided by the user with the Bgee intergenic fasta file.

### Description

This function will create a file corresponding to the concatenation of the transcriptome fasta file provided by the user and the corresponding intergenic fasta file created by Bgee.

### Usage

    merge_transcriptome_and_intergenic(
      myKallistoMetadata,
      myBgeeMetadata,
      myUserMetadata
    )

### Arguments

`myKallistoMetadata` | A Reference Class KallistoMetadata object.
`myBgeeMetadata` | A Reference Class BgeeMetadata object.
`myUserMetadata` | A Reference Class UserMetadata object.

### Value

save merged file on the hard drive

### Author(s)

Julien Wollbrett.

### Examples

    {
    bgee <- new('BgeeMetadata', intergenic_release = '0.1')
    user <- new ('UserMetadata', species_id = '6239')
    kallisto <- new('KallistoMetadata')
    user <- setTranscriptomeFromFile(user, system.file("extdata",
    "transcriptome.fa", package = "BgeeCall"), 'WBcel235')
    merge_transcriptome_and_intergenic(kallisto, bgee, user)
    }

[Package BgeeCall version 1.3.1 Index]